Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1059 ATGGCCTTTCCCTGGTGGGAAAAGCCTCTGGATGAGCTACTTCAAGACAATTTTAGCATAGCCCCTATGTTACACCTATTTTTCATGCGCTACATAAGTTGCTGCTCCATGTGGGTTTCAGCAGTCATGGCAGCTGAAACAGACAATGGTCTTGTGGCAATCATGGCAAATGAAAAACGTATTGATATGAAGGAGGGCGGTGAAGAAATTCCTCCGTCTGATCCCTTGTTTAAGAAGAAAAAGAACATTTTGATGCAAGATCCTGAAGGTGGTTGCTCCAATGAGGAGCTCCAACTGCAGAATCATGCAGCTAACTCTTCTAAGGTGTGTAAAACAAGGCAGAAACCCCGACAAAAGCTTGTCAGAATTATAGTAACTGACCCTGATGCTACTGACACTGACTCTTGCACTAGCGAAGATGATGTGGAAAAACCTATAACATCACGAGGAGGGGAGAGGCAAGTAACACAGATCTGCATCAACATTTGCTCGGATTCTGCTTCCTCTTTTGTCTCTACTCCTTTTCCTACCAAGGAAGACTTAACCCACATTGAGAAACCAAATAAATCATCCGACAATGATGACATGGCTGGTGGCCACAAGAAGTACAGGGGTGTTCGCCGGAGGAAATGGGGTCGGTGGGCTGCTGAAATCCGAGACCCAGTTAGTCGGAAAAGGCTCTGGCTTGGAACCTTTGACACTGCAGAGGAAGCTGCTTCTGAGTATGACAAGGCTGCTGTGAAGCTGAGGGGTCTTAATGCCATTACCAACTTCCCTCAGTCTGTGACAAAGGAGGTGAAGCCTGCCATCACCCGTGACAGCTCAAGCGCTGATAGTTTTACCTCGTTCGGTGCCCTGGCATCCCCAACATCTGTGCTGTCTTAG 885 0.4723 MAFPWWEKPLDELLQDNFSIAPMLHLFFMRYISCCSMWVSAVMAAETDNGLVAIMANEKRIDMKEGGEEIPPSDPLFKKKKNILMQDPEGGCSNEELQLQNHAANSSKVCKTRQKPRQKLVRIIVTDPDATDTDSCTSEDDVEKPITSRGGERQVTQICINICSDSASSFVSTPFPTKEDLTHIEKPNKSSDNDDMAGGHKKYRGVRRRKWGRWAAEIRDPVSRKRLWLGTFDTAEEAASEYDKAAVKLRGLNAITNFPQSVTKEVKPAITRDSSSADSFTSFGALASPTSVLS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1059 294 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Lele03g1059 294 PRINTS Ethylene responsive element binding protein signature 225 241 IPR001471 GO:0003700|GO:0006355
Lele03g1059 294 CDD AP2 201 261 IPR001471 GO:0003700|GO:0006355
Lele03g1059 294 FunFam Ethylene-responsive transcription factor 2 201 260 - -
Lele03g1059 294 SUPERFAMILY DNA-binding domain 202 261 IPR016177 GO:0003677
Lele03g1059 294 Gene3D AP2/ERF domain 201 261 IPR036955 GO:0003700|GO:0006355
Lele03g1059 294 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 117 293 - -
Lele03g1059 294 SMART rav1_2 202 265 IPR001471 GO:0003700|GO:0006355
Lele03g1059 294 Pfam AP2 domain 202 251 IPR001471 GO:0003700|GO:0006355
Lele03g1059 294 ProSiteProfiles AP2/ERF domain profile. 202 259 IPR001471 GO:0003700|GO:0006355
Lele03g1059 294 MobiDBLite consensus disorder prediction 180 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1059 Lele-ChrLele03 6125336 6126948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1059 99 294 AP2-EREBP Transcription Factor Family AT4G27950 40.000 8.01e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele03g1059 AP2 7.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1059 03 6125336 6126948 Lele03g1059 03 6125336 6126948 ECH
Lele01g1054 01 6121799 6122596 Lele03g1059 03 6125336 6126948 hybridization
Lele02g1082 02 6807458 6808435 Lele03g1059 03 6125336 6126948 hybridization