Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1054 ATGTCGTATGTTCCTCCTCACCTCAGGAGCTCCAGCTCCACCACTGTTGCCGCCAGAATTTCATCTCTCGCCTTAGACACCAACGATCACAGCAAGCTTCCCAATTCTCACTTCCACACTTCTCTCACTCCGTCGTCATCCTCCAGCTACTCCAATTCCTCTCGCCGGAGCTCCGGAGCTCCTCCTCTATCCCGCACTCTCTCCGTCCCCGACCCCGTGTTCCCTCATTGGCTACCGTCTGAACGCGTTTCTCGTATGAAGCCCGAGCAGATTGAAGAGGTTCGACTGCGGCTTAATCTTGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGAACCCGAGTATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCACAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAACCACCAATTCGGCGTGGCGATGGTCCTTTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAGTCATTAAGAACTGCAATAGTTGTAGGGGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGAGCTGGGGTTGACATAGTGGTTGCTACCCCTGGAAGATTCATCGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATATCTTTTGTTGTTCTAGACGAGGCAGATAGGATGCTTGATATGGGCTTTGAACCACAGATAAGAGAGGTCATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTATTCAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCAAGTCCGGTGCAAGTGAAGGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGGCTTCTGGATATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATGCAGTCGTCCATTTCCATTAACAATTGTGTTTGTGGAAAGGAAGACAAGGTGTGATGAAATTGCTGAAGCATTAGTAGCCCAAGGCTTATCTGCTGTTTCTCTTCATGGTGGCCGTAGTCAGAATGAAAGAGAGGCTGCTTTGCATGATTTTCGAAGTGCCTCCACTAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGACGTCACAGGAGTGTCACATGTCGTCAACTTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGCAGGACAGGGCGTGCAGGATCAACAGGCCATGCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTTGCAAATATAAGGAAGGCTATAGCTGATGCTGAGTCTGGGAATGCTGTGGCTTTTGCAACCGGGAAGGTTGCTAGAAGGAAGGAGAAAGAGGCGGCAGCTGCCCACAAAGAGGCAAAGATAGCTTTGTCCAAGAACTTAGCTTCTGGAACCGCCTCAATCGCTATTGAGGATAAGTATAGGTTCATGATTACCACATCAAATAGCAAAAGAGAGGGTGCAGCGGATACTCCAAGCTTCAGAAGTCGGACGGGACTAATGGATGATCCATCAAAATAG 1719 0.4654 MSYVPPHLRSSSSTTVAARISSLALDTNDHSKLPNSHFHTSLTPSSSSSYSNSSRRSSGAPPLSRTLSVPDPVFPHWLPSERVSRMKPEQIEEVRLRLNLDVSVASDSLPAPAPIESFSDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLRTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVSENEKIDRLLDMLVEEASQAEKCSRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRSASTNILVATDVASRGLDVTGVSHVVNLDLPKTMEDYVHRIGRTGRAGSTGHATSFYTDRDMFLVANIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEAKIALSKNLASGTASIAIEDKYRFMITTSNSKREGAADTPSFRSRTGLMDDPSK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1054 572 CDD SF2_C_DEAD 337 473 - -
Lele03g1054 572 MobiDBLite consensus disorder prediction 28 64 - -
Lele03g1054 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 505 IPR001650 -
Lele03g1054 572 SMART ultradead3 135 340 IPR014001 -
Lele03g1054 572 SMART helicmild6 383 464 IPR001650 -
Lele03g1054 572 Pfam DEAD/DEAH box helicase 140 310 IPR011545 GO:0003676|GO:0005524
Lele03g1054 572 Gene3D - 76 327 IPR027417 -
Lele03g1054 572 Gene3D - 329 523 IPR027417 -
Lele03g1054 572 CDD DEADc 127 324 - -
Lele03g1054 572 FunFam probable ATP-dependent RNA helicase DDX17 76 326 - -
Lele03g1054 572 Coils Coil 202 222 - -
Lele03g1054 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724
Lele03g1054 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 484 IPR027417 -
Lele03g1054 572 Pfam Helicase conserved C-terminal domain 348 464 IPR001650 -
Lele03g1054 572 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 516 - -
Lele03g1054 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 323 IPR014001 -
Lele03g1054 572 MobiDBLite consensus disorder prediction 28 67 - -
Lele03g1054 572 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Lele03g1054 572 MobiDBLite consensus disorder prediction 548 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1054 Lele-ChrLele03 6103788 6109510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1054 116 486 Eukaryotic Initiation Factors Gene Family AT1G72730 35.200 2.87e-68 225