Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1040 ATGCCACACCACACTTCTTCTTCTTCTCCTACTGCAATAATGCTTCTCATTGTTGTCTCCATCAGCATTCTCCTCCAAGGCTTCACCGCCACCGGGTATGGCGATTGGCAGAGCGCTCATGCCACCTTCTACGGCGGTGGTGATGCCACCGGCACAATGGGAGGGGCATGTGGGTATGGGAATTTGTACAGTCAGGGGTATGGAACCGACACGGCGGCTCTGAGCACAGCTCTGTTCAACAATGGCTTAAGCTGTGGGGCTTGTTATGAATTAAGATGTAGCAGTGACCCAAGATGGTGCAAGCCCGGCTCCATCATTGTCACTGCCACAAACTTTTGCCCACCAAACTTAGCTTTGCCCAACAACAATGGAGGTTGGTGCAACCCTCCACTTCAGCACTTTGACATGGCTGAACCTGCCTTCCTCCAAATCGCTCAATACAGAGCAGGGATCGTCCCTATTTCCTTCAGAAGAGTGCCGTGTATGAAGAAAGGAGGAGTAAGGTTCACGATCAATGGTCATTCATATTTCAACTTGGTTTTGATCACCAACGTGGGAGGTGCAGGGGATGTTCATGCGGTGTCAATCAAAGGGTCGAGAACAGGGTGGCAATCCATGTCCAGGAACTGGGGCCAGAACTGGCAGGGCAACTCTTACCTGAATGGTCAAGCTCTGTCCTTCCAAGTCACCACAAGTGATGGTAGGACCCTCACAAGCTACAACGTGGCACCTCGTAATTGGCAGTTTGGCCAGACCTTCCAAGGTGGTCAGTTTTAA 777 0.5122 MPHHTSSSSPTAIMLLIVVSISILLQGFTATGYGDWQSAHATFYGGGDATGTMGGACGYGNLYSQGYGTDTAALSTALFNNGLSCGACYELRCSSDPRWCKPGSIIVTATNFCPPNLALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQSMSRNWGQNWQGNSYLNGQALSFQVTTSDGRTLTSYNVAPRNWQFGQTFQGGQF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1040 258 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Lele03g1040 258 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Lele03g1040 258 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Lele03g1040 258 FunFam Expansin 166 258 - -
Lele03g1040 258 FunFam Expansin 26 162 - -
Lele03g1040 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Lele03g1040 258 PANTHER EXPANSIN-A15 14 258 IPR002963 GO:0009664
Lele03g1040 258 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Lele03g1040 258 Pfam Lytic transglycolase 71 155 IPR009009 -
Lele03g1040 258 Gene3D - 166 258 IPR036749 -
Lele03g1040 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 166 IPR007112 -
Lele03g1040 258 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Lele03g1040 258 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Lele03g1040 258 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Lele03g1040 258 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Lele03g1040 258 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Lele03g1040 258 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Lele03g1040 258 SMART dpbb_1 71 156 IPR007112 -
Lele03g1040 258 SUPERFAMILY Barwin-like endoglucanases 35 184 IPR036908 -
Lele03g1040 258 Gene3D - 25 162 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1040 Lele-ChrLele03 6020751 6021726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1040 9 258 Expansin Gene Family AT2G40610 77.291 7.72e-146 406