Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1024 ATGGAAGCTTCGCCGGAGGACTCATATTCTCTTCCCTCGCCGTCGTTGCTGGCGAACGCGCCGAAGAGAAAGCGCACCGCCGAACTGGCACCCAACGAGCTGGCTAAGATGCTTTTAAACTCTGCTGAAGAAGTTTATCAGAGATTCATGGAAGAACTTCGAACTGTACTCGTTATTCCGGCGGATGTGGCGGCCAAGAGAGAACGTCAAATCCGGGTTCTGATGTCTCTACGCTATTTACATTCTGAAGGGTCTCCTCTTCAATTACTGGAACAAGGTCCGGGGTTTCCTAAAAATAGCTTCTTTCTCATCGCCTTTCGGTGGGGTGTTATGGAGATATCCTTGTTAAAGATGCTTGTTAATGGCATATCCTCATTTTTGCATCTATCTTCTTCTGGGAATGGGAACTCAGAATTTGTTTCCAAGTATTACCAAAAGGTGGAGGAGACACTTAAGGTGCTCAAGCCTATAGCTGATGCTTTGGTTAATTCTGAATTAGCTTCTGATGAAGTGCTTAACAAAGCATTTGAAGAAGTGGGTAGGGCTGTGGACGAGTTGAGGGAGCTTTTTGGGAATTGGAACCCCTTTTCTAGCAAAGTTTACTTTGTTAAGCAAGTTGAATCCTTGCTATCTAGGATTCAGACTTCAGCACTCAATATTTTCCAGCAGATGAAGACTTCTCATCCAAGTCTCCCAGACGAACTGAATACTGTACAAGTTGAGCATTGTGTTGAGAAACTTAAGCTTTTGGGACATGAGGAGGAAATCTTGCCAGTCATTAAAGAAGCTATTAGCGAACAAGTGGAAGGTGCAGGACCTAGTTCAGAGGTCCTAGCAAACATTGCTGAGAGCCTTGGCCTGAAGTCTAACCAAGAGATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGATTGCTGAACAAGCTGAAAAAACTGCTGAAGCCGAGTATATTGATCAAATGATTACTCTTGTAACTCGTATGCATGAGCGTCTTGTTGCACTTAAGCAAGCCCAGAGCTGTAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGCTAATGATGGATCCAGTAATTGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTCATCAAGAACTGGATTGATTTGGGACTTACCGTCTGTCCAAAGACTCGTCAGACCTTGGCTCACACCAACTTAATACCTAACTACACTGTAAAGGCGTTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGCTGATCCCATAGTATCCACAAACTTAAATCAAGCATCTTTTCTTCATGGGTACATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGCCCGTTCTAGGACCAACCATCCATCCTCCCCGGAGCCAGTTCGCTCCCATTCTTTCAGTTCACCAAGTAAAACTTCTGGAGGAATCCAGAGAGAGGGAACATCACCATATCATCCTCGTTCGACTTCAGAAGGCTCCTTAAGTGGCATGGCTAATGGACAGTGCATGGATTTTGCAAGAACATCACCTGCGGGTTCTGATGATAGGTCTGCTAGCTCAGATGAAAGGAGTGAGGATTCCGGTGTCCAACCGTCAATGTCTCAATCTATGACTGAATCTTCCAATGCCCATAGCTCTGAACAATCCCGAGCCCATATTAGAGCAGCTTCTGATTCCAGTGCACTTTCCAGTATTCAAGGAACACAAGGTGATGGTCCTCAGCTGTCAACCACTCCTGGCAATAGTAAGGATGCTTCTGTGGGGGTAAATTCTGGGATAGATACTAACAGTGCTGCAGCTAATGGTGCTCCCCAGAGAGAACCTGAGATCTCACCCCGTGTGGAGACAAGGCCTCGACACCAAAGTATATGGCGGCGGCCATCAGAAAGATTTGTTCCTAGAGTGGTGCCCTCTGCCGGTGAAACAAGACCTGATCTTGCTGGAATTGAAGTCGAGGTTAAGAGTTTGGTTGAGGACTTGAAGAGTGCTTCTCTTGATACTCAAAGGGAGGCAACATCAAGGCTCCGCCTTCTTGCTAAGCATAATATGGATAATCGACTCGTGATTGCAAATTGTGGAGCCATTGACTTGTTGGTTGACTTGCTTAAATCAAATGATACGACTATCCAGGAAAATTCTGTTACAGCCCTTCTGAACTTATCAATCAATGACAACAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTAATCCATGTGCTTCAGACAGGAAGCCCAGAAGCCAAGGAGAATGCAGCTGCCACTCTCTTCAGCTTATCAGTGATTGAAGAAAACAAGATCAAGATAGGGAGGTCTGGGGCAATTGGGCCTCTGGTTGATTTATTAGGTTATGGAACTGCAAGAGGAAAGAAAGATGCTGCCACTGCTTTGTTTAACTTGTCAATTTATCATGAAAACAAGGGCCGCATCGTTCAAGCTGGAGCTGTGAAGCACCTTGTGGAATTAATGGATCCAGCGGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAACCTTGCCACAATTCAAGAAGGAAGAACCGCCATTGGCACGGAAGGCGGGATCCCTGTTTTAGTCGAGGTTGTCGAGTTGGGTTCCATGAGAGGCAAGGAAAATGCAGCTGCCGCTCTACTACATCTTTGCTCAAACAATCCTCGATATTTGAGCACAGTGCTTCAAGAAGGAGCCGTCCCACCATTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCTAAAGAAAAGGCCCAGGCTCTCCTCAACCAGATTAGAAATCAAAGACACAATGCGGGGAGAGGCTGA 2820 0.4582 MEASPEDSYSLPSPSLLANAPKRKRTAELAPNELAKMLLNSAEEVYQRFMEELRTVLVIPADVAAKRERQIRVLMSLRYLHSEGSPLQLLEQGPGFPKNSFFLIAFRWGVMEISLLKMLVNGISSFLHLSSSGNGNSEFVSKYYQKVEETLKVLKPIADALVNSELASDEVLNKAFEEVGRAVDELRELFGNWNPFSSKVYFVKQVESLLSRIQTSALNIFQQMKTSHPSLPDELNTVQVEHCVEKLKLLGHEEEILPVIKEAISEQVEGAGPSSEVLANIAESLGLKSNQEILIEAVALEKLKEIAEQAEKTAEAEYIDQMITLVTRMHERLVALKQAQSCSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPADPIVSTNLNQASFLHGYMESGTTRESPVFARSRTNHPSSPEPVRSHSFSSPSKTSGGIQREGTSPYHPRSTSEGSLSGMANGQCMDFARTSPAGSDDRSASSDERSEDSGVQPSMSQSMTESSNAHSSEQSRAHIRAASDSSALSSIQGTQGDGPQLSTTPGNSKDASVGVNSGIDTNSAAANGAPQREPEISPRVETRPRHQSIWRRPSERFVPRVVPSAGETRPDLAGIEVEVKSLVEDLKSASLDTQREATSRLRLLAKHNMDNRLVIANCGAIDLLVDLLKSNDTTIQENSVTALLNLSINDNNKSAIANAGAIDPLIHVLQTGSPEAKENAAATLFSLSVIEENKIKIGRSGAIGPLVDLLGYGTARGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGTEGGIPVLVEVVELGSMRGKENAAAALLHLCSNNPRYLSTVLQEGAVPPLVALSQSGTPRAKEKAQALLNQIRNQRHNAGRG 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1024 939 FunFam RING-type E3 ubiquitin transferase 641 935 - -
Lele03g1024 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 779 821 IPR000225 GO:0005515
Lele03g1024 939 SUPERFAMILY RING/U-box 340 422 - -
Lele03g1024 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 420 IPR013083 -
Lele03g1024 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 697 739 IPR000225 GO:0005515
Lele03g1024 939 Coils Coil 297 320 - -
Lele03g1024 939 CDD RING-Ubox_PUB 351 393 IPR045210 -
Lele03g1024 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 820 861 IPR000225 GO:0005515
Lele03g1024 939 PANTHER U BOX DOMAIN-CONTAINING 141 928 - -
Lele03g1024 939 MobiDBLite consensus disorder prediction 614 630 - -
Lele03g1024 939 SMART Ubox_2 350 413 IPR003613 GO:0004842|GO:0016567
Lele03g1024 939 SMART arm_5 890 931 IPR000225 GO:0005515
Lele03g1024 939 SMART arm_5 768 808 IPR000225 GO:0005515
Lele03g1024 939 SMART arm_5 686 726 IPR000225 GO:0005515
Lele03g1024 939 SMART arm_5 809 848 IPR000225 GO:0005515
Lele03g1024 939 SMART arm_5 849 889 IPR000225 GO:0005515
Lele03g1024 939 SMART arm_5 727 767 IPR000225 GO:0005515
Lele03g1024 939 Pfam U-box domain 347 417 IPR003613 GO:0004842|GO:0016567
Lele03g1024 939 MobiDBLite consensus disorder prediction 448 630 - -
Lele03g1024 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 738 780 IPR000225 GO:0005515
Lele03g1024 939 MobiDBLite consensus disorder prediction 448 501 - -
Lele03g1024 939 Gene3D - 654 936 IPR011989 -
Lele03g1024 939 Pfam Armadillo/beta-catenin-like repeat 727 766 IPR000225 GO:0005515
Lele03g1024 939 Pfam Armadillo/beta-catenin-like repeat 688 725 IPR000225 GO:0005515
Lele03g1024 939 Pfam Armadillo/beta-catenin-like repeat 770 807 IPR000225 GO:0005515
Lele03g1024 939 MobiDBLite consensus disorder prediction 528 606 - -
Lele03g1024 939 ProSiteProfiles U-box domain profile. 346 420 IPR003613 GO:0004842|GO:0016567
Lele03g1024 939 FunFam RING-type E3 ubiquitin transferase 346 421 - -
Lele03g1024 939 SUPERFAMILY ARM repeat 657 929 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1024 Lele-ChrLele03 5929449 5936925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1024 306 939 U-box Gene Family AT2G23140 60.714 0.0 699
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1022 01 5917850 5924945 Lele03g1024 03 5929449 5936925 hybridization
Lele02g1037 02 6387539 6394112 Lele03g1024 03 5929449 5936925 hybridization