Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1006 ATGGCTTCTTCTTCGGGAAGCCTTGACACTTCTGGTAACTCCCACCCCACCTTCACTTTCTCCACGCATCCATTCATGAATACTTCTTTCTCTGAACTTCTCGCTTCTCCCCCCGCCACCACCGATAACCCCGCCTCCGCCGTCGATAAACCGCGCGGATTGTCGGATCGTATCGCGGAGAGAACTGGGTCGGGTGTGCCCAAGTTCAAGTCGACCCCACCTCCTTCTCTCCCTCTCTCTCCTCCTGCCATCTCTCCTTCTTCTTACTTCGCCATCCCTGCTGGGTTGAGCCCTGCAGAGCTTCTCGACTCGCCTGTTCTCCTTAATGCTTCTAACATTTTGCCATCTCCGACAACTGGAGCATTCTCTGCCCAGGCCTTCAATTGGAAGAGCAGTTATGGGCAAAACCTGCAAAATATGAAAGAAGAGAAGAACTTCTCAAGTTTCTCGTTTCAACCCCAACCCAGACCTCCTCTTCTATCCACCACAACGTTTCAAAATTCAGCTGCCTCTAATCAAACGGCATGGAGTCTTCAAGAAGCCACGAAGCAAGATGACTTTTCTTCAGGAAAGAATATGGTGAAAGCCGAGAACGCTTCACAGAACTATTCCACTGAGATGCTAATCAGTAATGTCCAAGCAAACCATAATAATGGGTTTCAGTCGGATCATGGAAATTACCATCCACAACCTCAGACCTTAAGCAGAAGGTCAGACGATGGATATAACTGGAGAAAATATGGGCAGAAGCAAGTGAAAGGAAGTGAGAATCCTAGAAGCTACTTCAAATGCACATACCCTAATTGCCCAACAAAGAAGAAGGTTGAGAGGTCTCTGGATGGGCAAATTACTGAGATAGTTTACAAGGGAACACATAACCACCCCAAGCCTCAGGCAACTAGGAGAAACTCATCAAATGCATCTTCTCTCGCAATTGCTGCTTCAAATTCTGTTGCAGCTGAAATCCCAGATCAGTCATTTGCTAGCCATGGTAATGGACAAATGGATTCGGCTGCAACACCAGAGAACTCATCGATATCAATGGGGGACGATGATTTTGAACAGACTTCCCAGAGGACTAGATCAGGAGGAGATGAGTTTGATGAAGACGAATCTAATGCCAAAAGATGGAAAATGGAAGGTGAAAATGAGGGCATATCGGCAGCTGGAAGCAGAACAGTAAGAGAACCGAGAGTCGTAGTCCAGACAACCAGTGACATAGATATTCTAGATGATGGATACAGATGGAGAAAGTACGGGCAAAAAGTAGTGAAGGGAAATCCAAATCCAAGGAGTTACTACAAATGCACGCACACAGGATGTCCGGTGAGGAAGCACGTAGAGAGAGCTTCACACGACCTAAGGGCAGTGATCACAACGTACGAGGGAAAGCATAACCATGATGTACCTGCGGCCAGAGGGAGTGGCAACCATTCTGTAAACAGACCTCTCTTAAACAATTCCACAAACACCAACGGTGCAATGACGGCAGCCATAAGGCCATCGGCCATCACACACAACACTAACAACTCTATTCAGAATTTTAGGGCCGGAGCGTCAGCACCAGAAGGCATAGGGTTTCCTCAGGGTCCAGGAAGCTTCGGGTTTTCAGGGTTTGGGAATCCAATGGGGTCTTTCATGAACAACAACAACAATAATAATAACCAGCAGCAAGCACAATCTGGGAATGGATTTTCTTCCAGAGCAAAGGAGGAGCCGAGGGACGACATGTGTCTGGAGTCTCTACTGTGCTGA 1755 0.4746 MASSSGSLDTSGNSHPTFTFSTHPFMNTSFSELLASPPATTDNPASAVDKPRGLSDRIAERTGSGVPKFKSTPPPSLPLSPPAISPSSYFAIPAGLSPAELLDSPVLLNASNILPSPTTGAFSAQAFNWKSSYGQNLQNMKEEKNFSSFSFQPQPRPPLLSTTTFQNSAASNQTAWSLQEATKQDDFSSGKNMVKAENASQNYSTEMLISNVQANHNNGFQSDHGNYHPQPQTLSRRSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQATRRNSSNASSLAIAASNSVAAEIPDQSFASHGNGQMDSAATPENSSISMGDDDFEQTSQRTRSGGDEFDEDESNAKRWKMEGENEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGNHSVNRPLLNNSTNTNGAMTAAIRPSAITHNTNNSIQNFRAGASAPEGIGFPQGPGSFGFSGFGNPMGSFMNNNNNNNNQQQAQSGNGFSSRAKEEPRDDMCLESLLC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1006 584 MobiDBLite consensus disorder prediction 520 584 - -
Lele03g1006 584 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 547 IPR044810 GO:0003700
Lele03g1006 584 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 Pfam WRKY DNA -binding domain 411 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 FunFam WRKY transcription factor 33 397 463 - -
Lele03g1006 584 MobiDBLite consensus disorder prediction 216 242 - -
Lele03g1006 584 FunFam WRKY transcription factor 229 298 - -
Lele03g1006 584 ProSiteProfiles WRKY domain profile. 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 MobiDBLite consensus disorder prediction 354 382 - -
Lele03g1006 584 SMART WRKY_cls 410 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 SMART WRKY_cls 238 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 MobiDBLite consensus disorder prediction 216 238 - -
Lele03g1006 584 Gene3D WRKY domain 226 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 ProSiteProfiles WRKY domain profile. 405 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 MobiDBLite consensus disorder prediction 542 567 - -
Lele03g1006 584 Gene3D WRKY domain 397 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 MobiDBLite consensus disorder prediction 289 308 - -
Lele03g1006 584 MobiDBLite consensus disorder prediction 1 80 - -
Lele03g1006 584 MobiDBLite consensus disorder prediction 1 43 - -
Lele03g1006 584 MobiDBLite consensus disorder prediction 326 390 - -
Lele03g1006 584 SUPERFAMILY WRKY DNA-binding domain 237 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele03g1006 584 MobiDBLite consensus disorder prediction 326 353 - -
Lele03g1006 584 SUPERFAMILY WRKY DNA-binding domain 402 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1006 Lele-ChrLele03 5832480 5835100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1006 66 509 WRKY Transcription Factor Family AT2G38470 49.780 7.12e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele03g1006 WRKY 2.3e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1006 03 5832480 5835100 Lele26g1649 26 19621875 19623415 CCT
Lele03g1006 03 5832480 5835100 Lele28g1645 28 17295126 17296649 CCT
Lele03g1006 03 5832480 5835100 Lele03g1006 03 5832480 5835100 ECH
Lele01g1005 01 5814728 5817360 Lele03g1006 03 5832480 5835100 hybridization