Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0957 ATGCACTATGCCGCGTACGTACGGCGAGGGCCTACCCATAGGGAGGGAAGAGAAACCATACCAGTGTGTCTCTCTGTATTTATGCAAGTGAAAATGGAAGATTTGGTAATTACTTATACTGTGTCTCGTATGAGCTTTTGGGTGCAAGATATGGCTGAGTGGTTCTCTCTAGGTGGAAAACAATTAGGCCCACCACAAACGAAGGCAGAAGAAGGAAAAGAAGATAACAGCAACAGCAATTGTCTATTCTTGCTGGGCGAGAAGGAGATCTACAGCAGCAGCAGCAACAGCAAGGGAGGATTCGAGATATGGACACAGTCTTATCATTCATCAAACCAATCCTTGAGCAACGACTTCTCTCTTGGGGTGGGTCCTAGTTGTGCAAACTTGTTTGATGAGTCAACAAGGTTTGGATTAACGGTGATGAGGTCTGGGGCTCTAGGAAGCGGCATGAATTGTCAGGATTGCGGGAACCAAGCGAAGAAAGATTGTGCACATCTTAGATGCAGAACTTGCTGTAGAAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTGCCGCCGCCAAACGCCGTGAGCGGCAGCAACAGCACCTTATACAACAACATCGGCAACTTCCCGCCGGCGATACCTCCAAACGGCACAGAGAAACTCAAGGTGCAGCAGCCGCTCTTGCTCGCATTCCTTCACCTATCCCCACCACAGGGTTGGAACTGGGACAATTGCCTCGCGAACTGAACTCACCAGCAGAGTTTCAGTGTGTGAGAGTTAACTCAATGGACACACCAGAAGAGCAGTACGCTTATCAAACCGCTGTTAACATCGGAGGGCATGTTTTCAAAGGAATCCTCTACGACCAAGGCCCTGATGCTCCTTATAACGCAGGCGGTGATCGGAGCTCCTCCGCCGCCGCAGCTGATGCTGATCATCAAAATCTTAATCTCATAATGGCCTCAACCACGGCAGCTCCGGCTGCCAGCGCCAACCCGTTTTATCCTTCAATTTACCCTAACATCCCACTTAATACTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAGATCCTAA 1080 0.4954 MHYAAYVRRGPTHREGRETIPVCLSVFMQVKMEDLVITYTVSRMSFWVQDMAEWFSLGGKQLGPPQTKAEEGKEDNSNSNCLFLLGEKEIYSSSSNSKGGFEIWTQSYHSSNQSLSNDFSLGVGPSCANLFDESTRFGLTVMRSGALGSGMNCQDCGNQAKKDCAHLRCRTCCRSRGFQCQTHVKSTWVAAAKRRERQQQHLIQQHRQLPAGDTSKRHRETQGAAAALARIPSPIPTTGLELGQLPRELNSPAEFQCVRVNSMDTPEEQYAYQTAVNIGGHVFKGILYDQGPDAPYNAGGDRSSSAAAADADHQNLNLIMASTTAAPAASANPFYPSIYPNIPLNTFMAGTQFFPPPRS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0957 359 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 245 292 IPR006511 -
Lele03g0957 359 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 52 330 IPR007818 GO:0003700|GO:0006355
Lele03g0957 359 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 152 194 IPR006510 -
Lele03g0957 359 Pfam Domain of unknown function (DUF702) 150 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0957 Lele-ChrLele03 5572198 5576493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0957 51 359 C2H2 Transcription Factor Family AT1G75520 40.884 1.75e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele03g0957 DUF702 2.6e-60 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0104 28 608343 609410 Lele03g0957 03 5572198 5576493 CCT
Lele25g0099 25 625259 627705 Lele03g0957 03 5572198 5576493 CCT
Lele26g0109 26 624116 626566 Lele03g0957 03 5572198 5576493 CCT
Lele27g1986 27 24099494 24101929 Lele03g0957 03 5572198 5576493 CCT
Lele03g0957 03 5572198 5576493 Lele03g0957 03 5572198 5576493 ECH
Lele01g0961 01 5552176 5553625 Lele03g0957 03 5572198 5576493 hybridization