Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0918 ATGCGACTGTCGTGCGTCGACCTGTCATCGCTTGTCCTTCTTGTTAATCGTCCTCTTGAAGCTAGACGATTCAGAGTTTTGATTGCGATACATGTCATGGCGGAGCTGGAGAATCCATCTTCAATGGAAGTTTCTGCAGCTTCCGGAGAAGCTAGCTTTTCACCCTCTGGCATTCAGAACGCGCCTGATGAACTCCCTCCCCCGAAAAAGAAGCGAAACCTCCCCGGAATGCCGGATCCAGATGCCGAAGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTTGTGTGTGAGATCTGCAATAAAGGATTTCAACGGGACCAAAACCTGCAACTTCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACTAGCAAGGATTTTCGAAAGAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTCCACCATAACCCAACGAGGGCGCTAGGTGATCTCACCGGCATCAAGAAGCATTTTTGTAGGAAACATGGCGAAAAGAAGTGGAAATGCGAGCGTTGCTCCAAGAAGTACGCCGTACAGTCCGATTGGAAGGCTCATATGAAGACTTGCGGAACTAGAGAGTACAAATGTGACTGCGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCACAGAGCCTTTTGCGATGCCTTGGCGGAAGAAAGCGCCAGAACCCGAAACCTAACCATTGGGGAAGGCTCCGAGGGGAATTCAAACGGGAAGGTGGCCCTGGCTTCGCCACCGCAGCCTCCACTAACTCCGTCAATGTCTGTGGTGTCTCCGGCTGTGTCCATCCAGAGCTCAGAAGTTTCGGAAAACCCAATCAGGTTGTCGCCGCCGTCCTCGAACGTAACGTGTTTACCAGCAACCACAGTCGCAAACAATACTACTCCCTCCAGTTCTACCAGTGTTTTCGCCAGTATATTTGCATCCTCATCAAGTGCTGCTCCTTCTCAAACATCATCGCCACTTTCATCGTATTCCAGTATGATGTCGAACTTGGCTCGTTCGGATTGCCCAACTACTGCCCCAACGTTGTCTGCGATAGAGCCCACATCTCTGTCCCTCTCCACATCGCTTTATCTCTCCAATAATGACTCATCGCTGTTCCCGGACCAACGTGACCCTCGGCACTACACTGCACCTCCTCAGCCTGCACTGTCCGCCACCGCATTACTCCAAAAGGCAGCTCAAATGGGTGCCGCTGCGTCCAATGCATCTTTGCTTCGAGGTTTAGGCTTGACACAAAACGATAGTACCTCGACACAAAGGAATATCCGTGTAAAGACGGAGAATCACTCGTTAACTGATGATGGCCTTGTACTTGGAATTTCTTCTGCTGGGAATACGGGTTTCGCCGACTTGATGATGGGCTCCTCCGCGGTAGCGTTCGGAGGACGACCGATGACTCGTGATCTTCTTGGTCTAAGCACAGGAGGTGCTGGCGGCGGGGCCAGCGGCAGGGGTGGTCTTTCTGCTTTGCTTACCTCTTTTGGAGGTAGATTTGATGTTGCAGAATCATCGACGGGAGGTAGGAATGCTCCGGCTGCAGATTAG 1578 0.519 MRLSCVDLSSLVLLVNRPLEARRFRVLIAIHVMAELENPSSMEVSAASGEASFSPSGIQNAPDELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDFRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRNLTIGEGSEGNSNGKVALASPPQPPLTPSMSVVSPAVSIQSSEVSENPIRLSPPSSNVTCLPATTVANNTTPSSSTSVFASIFASSSSAAPSQTSSPLSSYSSMMSNLARSDCPTTAPTLSAIEPTSLSLSTSLYLSNNDSSLFPDQRDPRHYTAPPQPALSATALLQKAAQMGAAASNASLLRGLGLTQNDSTSTQRNIRVKTENHSLTDDGLVLGISSAGNTGFADLMMGSSAVAFGGRPMTRDLLGLSTGGAGGGASGRGGLSALLTSFGGRFDVAESSTGGRNAPAAD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0918 525 MobiDBLite consensus disorder prediction 47 75 - -
Lele03g0918 525 MobiDBLite consensus disorder prediction 236 264 - -
Lele03g0918 525 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Lele03g0918 525 Pfam Zinc-finger of C2H2 type 98 120 - -
Lele03g0918 525 Gene3D Classic Zinc Finger 152 232 - -
Lele03g0918 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 51 484 IPR031140 -
Lele03g0918 525 FunFam protein indeterminate-domain 12-like 77 145 - -
Lele03g0918 525 Gene3D Classic Zinc Finger 78 143 - -
Lele03g0918 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Lele03g0918 525 SMART c2h2final6 98 120 IPR013087 -
Lele03g0918 525 SMART c2h2final6 139 169 IPR013087 -
Lele03g0918 525 SMART c2h2final6 174 194 IPR013087 -
Lele03g0918 525 MobiDBLite consensus disorder prediction 236 251 - -
Lele03g0918 525 FunFam protein indeterminate-domain 5, chloroplastic-like 152 231 - -
Lele03g0918 525 SUPERFAMILY beta-beta-alpha zinc fingers 97 195 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0918 Lele-ChrLele03 5331361 5334105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0918 45 504 IDZ Gene Family AT5G66730 52.988 2.62e-143 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele03g0918 zf-met 0.0038 CL0361