Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0909 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCGCCCCCAAGCCCTTCCTGCTCCAGCAACAATAATAACAATGGCACGGGCGATTTTGAATGCAATATTTGCTTTGACTTAGCACAAGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCATTCTCAGTTACGAGAATGCCCAGTGTGCAAGGCCCTAATCGAGGAGAAAAAGTTGGTCCCTTTATATGGGAGAGGAAAGACATCAACTGACCCGCGATCGAAATCTATTCCAGGCGATAATATCCCTCATCGGCCAGCTGGTCAGAGACCTGAAACTGCCCCTCCACGAGAACCAAATCATTTTCCTCAACATGGATTTGGATTTATGGGTGGGTTGGGAGGGTTTTCCCCAATGGCAACAGCAAGATTTGGGAATTTCACATGGTCAGCGGCATTTGGTGGTTTTATGCCATCCTTATTTAACTTCCAATTGCATGGATTTCATGGTGGGGCCATGTATAGTGGAGCTACTGGTTTTCCTTATGGACGTGCTCCTTCATTTCATGGCGGCCATGCTCATGGGTACCGTCAGTATACAGGTCAAGGACAACAAGATTACCACCTGAAGAGGCTGCTTCTGTTTGTTGTCTTTGGTGTCGTTCTTACGGTCTTGAGCAAGAAATCAATTACAAATGTGCACACGATACACTATCGGGAGCTACTTTTGTCATCCACTAACTTATGTGGGTTATACTTGCTTGATGGACTGAGATTGCAGCCTGTTTGTAATATTGAAAATCTATATCATAATTTTAGAAGTATCCATTTATTTCATTGCAATGGTTTGGAAGACAACAAGAGATTGGAGATAAGTAATATGGCAATTATATATCTTGCGATATGTTTGGTTTCACTTCAAATGTTGACCGTTGGATGGCATATGGAGTCAGGCACCGACGTTACTCGTCTATTGTTAGCTGCTGGTTCTGCTTTAAGGCCTGCGGACTTGGTTATTCTGCATGATTATCATTGTTCATAA 1047 0.4308 MASGFGESTSRSPPSPSCSSNNNNNGTGDFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQLRECPVCKALIEEKKLVPLYGRGKTSTDPRSKSIPGDNIPHRPAGQRPETAPPREPNHFPQHGFGFMGGLGGFSPMATARFGNFTWSAAFGGFMPSLFNFQLHGFHGGAMYSGATGFPYGRAPSFHGGHAHGYRQYTGQGQQDYHLKRLLLFVVFGVVLTVLSKKSITNVHTIHYRELLLSSTNLCGLYLLDGLRLQPVCNIENLYHNFRSIHLFHCNGLEDNKRLEISNMAIIYLAICLVSLQMLTVGWHMESGTDVTRLLLAAGSALRPADLVILHDYHCS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0909 348 MobiDBLite consensus disorder prediction 86 123 - -
Lele03g0909 348 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lele03g0909 348 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Lele03g0909 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Lele03g0909 348 SMART ring_2 32 72 IPR001841 -
Lele03g0909 348 SUPERFAMILY RING/U-box 28 85 - -
Lele03g0909 348 CDD RING-HC_AtRMA_like 30 74 - -
Lele03g0909 348 MobiDBLite consensus disorder prediction 1 22 - -
Lele03g0909 348 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Lele03g0909 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0909 Lele-ChrLele03 5269107 5270894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0909 16 212 C3H Transcription Factor Family AT1G19310 64.390 2.57e-83 250