Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0891 ATGCGATGGACTACAACCCTACACGCCCATTTTGTTCACGCTGTTCAACTTCTTGGCGGCCATGAAAGGGCAACTCCGAAATCAGTGTTGGAGTTGATGAATGTAAAAGATTTAACCCTAGCACACGTTAAGAGTCACTTACAGATGTATAGAACAGTGAAGAGCACTGCCAAATTTACCGGTCATAGCCACACTGATATGGGCTTAGCCGTTGCCGATCATGGAGCCTCAGCTCATCATGACAGAACCCATCTAACTCTGCCGCTTCAGAAATCTCACAGCAACAAGGAATCATGGCAATCATCAACGGAGACAAGGACAAACGATAGCAGACAAAAACCAGGAACGAGTTTGACGTATTCTCAAGTGAAGGCAAATGGAAGCGTGGTGGTTGGAGGGTCACTGTCAGATTCTTCAGATAAGACGCTTAACCTAGAATTCACCCTTGGAAGACCCAGTTGGAACACAGACCAGCACCCTCATCAATCATCAACAGACTTAACTCTTCTCAACTGTTAA 519 0.4566 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTAKFTGHSHTDMGLAVADHGASAHHDRTHLTLPLQKSHSNKESWQSSTETRTNDSRQKPGTSLTYSQVKANGSVVVGGSLSDSSDKTLNLEFTLGRPSWNTDQHPHQSSTDLTLLNC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0891 172 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 1 52 IPR006447 GO:0003677
Lele03g0891 172 MobiDBLite consensus disorder prediction 88 118 - -
Lele03g0891 172 Gene3D - 1 55 - -
Lele03g0891 172 FunFam Myb family transcription factor 1 55 - -
Lele03g0891 172 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 159 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele03g0891 172 Pfam Myb-like DNA-binding domain 1 51 IPR001005 -
Lele03g0891 172 SUPERFAMILY Homeodomain-like 1 53 IPR009057 -
Lele03g0891 172 MobiDBLite consensus disorder prediction 86 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0891 Lele-ChrLele03 5172576 5174746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0891 1 153 G2-like Transcription Factor Family AT4G17695 46.875 5.32e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele03g0891 Myb_DNA-binding 1.7e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0178 25 1074446 1076865 Lele03g0891 03 5172576 5174746 CCT
Lele26g0189 26 1104981 1106861 Lele03g0891 03 5172576 5174746 CCT
Lele27g1903 27 23653294 23656083 Lele03g0891 03 5172576 5174746 CCT
Lele03g0891 03 5172576 5174746 Lele25g0198 25 1160145 1163074 CCT
Lele03g0891 03 5172576 5174746 Lele27g1889 27 23568000 23570932 CCT
Lele03g0891 03 5172576 5174746 Lele03g0891 03 5172576 5174746 ECH
Lele02g0874 02 5309448 5311604 Lele03g0891 03 5172576 5174746 hybridization