Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0869 ATGCAATCAAACGGTTCGGATTCCCAACAACAACAGCAACCATCGGAGCAGAATCAACGGCAACAGCAAACGCCAACGCAGACGCCGCCACCTCTACAGCCACTGGCGCTGCCGCAGCAGTGGATGCCGATACAATACCCTGTGACGGCTATGGTAATGCAGCATCCCATGTTGCCTCCCCAGCATTATGGGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAGTACCAGCAGTTACCGCATGTGACTCACCCTCAACAGAATCAGCATCAGGGATCCACCGCCGATAACAAAACGATCTGGGTCGGCGATTTACATCATTGGATGGATGAGAATTATCTCCATCGCTGCTTCGCTTCCACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAACAAGCAGACTGGCCTATCAGAGGGTTATGGGTTTGTGGAATTCTATTCCCATGCCACGGCAGAAAACGTTTTGCAGAATTATGTCTCCATTTTGATGCCCAATACAGATCAACCTTTTCGCCTGAATTGGGCAACATTTAGCACAGGAGACAAGCGTTCGGATAATGTTCCCGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGCTTCGTCAGATTTGGAGATGATAATGAGAGGTCTCAAGCTATGACTGAAATGAATGGTACGTATTGTTCTAGCAGACCAATGCGTATTGGTGCTGCAACCCCTAGGAAATCATCTGGCTACCAACAAGGAGGCCATGCGTCAAATGGAACATCCAACCAATCCGAAGCAGACTCAACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGACGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCAAACAGGAACAATGCTGAAGAGGCATTGCAGAAGCTGAATGGGACAGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCGGACTTTGGCAACCACTGGAGCGGGGCATATTATGGAGGTCATGTTTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGGATATATGCTGCTGCATATGGGTCTTACCCCATTTATGGAGGCCACCAACAACAAGTAAGCTGA 1287 0.4693 MQSNGSDSQQQQQPSEQNQRQQQTPTQTPPPLQPLALPQQWMPIQYPVTAMVMQHPMLPPQHYGPPPPQPYMPYHQYQQLPHVTHPQQNQHQGSTADNKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYVSILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGTYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGNHWSGAYYGGHVYDGYGYALPPPHDPRIYAAAYGSYPIYGGHQQQVS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0869 428 Gene3D - 179 284 IPR012677 -
Lele03g0869 428 CDD RRM2_SECp43_like 191 270 - -
Lele03g0869 428 Gene3D - 285 400 IPR012677 -
Lele03g0869 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 90 374 - -
Lele03g0869 428 MobiDBLite consensus disorder prediction 1 35 - -
Lele03g0869 428 MobiDBLite consensus disorder prediction 272 302 - -
Lele03g0869 428 MobiDBLite consensus disorder prediction 261 302 - -
Lele03g0869 428 CDD RRM3_NGR1_NAM8_like 297 368 - -
Lele03g0869 428 SUPERFAMILY RNA-binding domain, RBD 70 159 IPR035979 GO:0003676
Lele03g0869 428 FunFam Polyadenylate-binding protein RBP47C isoform A 191 267 - -
Lele03g0869 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Lele03g0869 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Lele03g0869 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 160 IPR000504 GO:0003723
Lele03g0869 428 CDD RRM1_SECp43_like 100 180 - -
Lele03g0869 428 FunFam Polyadenylate-binding protein RBP47 283 400 - -
Lele03g0869 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Lele03g0869 428 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Lele03g0869 428 SMART rrm1_1 299 366 IPR000504 GO:0003723
Lele03g0869 428 SMART rrm1_1 100 175 IPR000504 GO:0003723
Lele03g0869 428 SMART rrm1_1 193 267 IPR000504 GO:0003723
Lele03g0869 428 Gene3D - 98 178 IPR012677 -
Lele03g0869 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Lele03g0869 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Lele03g0869 428 SUPERFAMILY RNA-binding domain, RBD 191 371 IPR035979 GO:0003676
Lele03g0869 428 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0869 Lele-ChrLele03 5063928 5067063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0869 297 384 Eukaryotic Initiation Factors Gene Family AT4G34110 33.684 4.54e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0869 03 5063928 5067063 Lele25g0903 25 5771105 5777581 CCT
Lele03g0869 03 5063928 5067063 Lele26g0909 26 5842400 5847919 CCT
Lele03g0869 03 5063928 5067063 Lele27g1175 27 18904952 18911556 CCT
Lele03g0869 03 5063928 5067063 Lele28g0891 28 5749654 5755111 CCT
Lele03g0869 03 5063928 5067063 Lele03g0869 03 5063928 5067063 ECH
Lele01g0873 01 5041698 5044831 Lele03g0869 03 5063928 5067063 hybridization