Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0839 ATGCAAGGGACAAGTGGTAGAATAGGTTCCTTGGCTGAAACCTTGGAATTTGATTGTGGATCTAGTTCAAGTAATGCTACTGTGGATCAGCAGATTTGCTGGGATAGCACGAGGAACCCTGTAGAAAATCAAATGCCTCAATTTATGCTTTCACCTGGTGATATGAACCCATTGTATGCAAATTCAATTAACCACCAATGGAAGAGCATGAATAATTGGAGAATTGGTGTCCCAAGTTCCAGTGGTTCTCATATTGAAATTAACAGTGACGAGCAGCAAAGAGATCTTGGATGGTCATCTTCAACAAGTGCTAATGCTGTTGCCGGTTCAAGATTAGAGCAGCACTTTGAACCAACCAGTTTACTTTCATTAGATAATGTCAATACAAGTCCTATGTGTATGAACAACTCCAATATTCATTGTGTAACACAGAATATCGACCTAAATGCCAGTTCAGTAGACACTGGCTGTAGCATGGGGCAACATCTTGAGCATCCTGGCTTGAACAAATCAAGTGGATCAGTAAATGAGCATATCCCACCTAATGTTGGTTCTGCGCCCTTTTCCCATCCTTCGGGAAGTAATATGGTAGATAATAGTGGTAGTAGGCCCGGGTGTTCTCTTGATTCCCGTGTATCTTGTAAAAGAAAGACTGTTGAAGGATATGTTGGACAATCTTCAGGTGGTGAAAGCTCTACCGGCAATCAGTGTACAGAAAGCAGTGCTTGGCATACACTTCCTACTCAGAGTAATTCTTGTAGCAGTTTAAGCAGATCTGCTTCGTCAGCTCAGATAAGTTCAAGACCTCCCCCGGGTGTGGGCAATGAAGTTGGGGTTGGATCGTCAGAGGGCTTTAATAATTTGAATGTTGCAGGAAGCTCAAATAGCTTCCTTAGGAATTCCCGTTTGAGGATAAATCCTTCAAACCAACAGGATTCCATTCCTTATGTTGCATTCTCAAATGGCAGTGTAACTAGGCGTTCTACAATTCCTTCATCATCTCCCATGACACAAAGTTTTTGTCCTCTGGATTTGAGGTCAGCACCATCTGCAGATGATATGGTTCCTCAAAGCCAGCCCCTTGGAACTAGTTCTCCTTCTTTACACAGGAATATGCCATCATTTAGATGGAGTGGCAGCTCTAACTCTAGAAACAGCCATTTGTCAAATTCAATTATTTGGTCAGACGGGGATAATCTACTACATGAAGAAGGAAGCTCAAGAAGCATGTCTAGAAGCATATTCGAACATCCAATGTTTGTGCAAGCGGCTGATTTAAGAAATTCGGTTCGAAATCCAACCAATAGGGCTTCAAGTAGTGCAAATTTAAATATATCAGGAAATGTAACTTCCTCGCTGCGTAGTGGGTCAAGTTCAGCCATCAATTCACCATCTGTTCCATCCTGGGTTTCTCGTCCCAATCCTCTACATCATCCACGGAGGTTACCTGGTTATGTTCGTAGAACATTGTTGTCTTCTAGTTCCGGGGCTGCTGGAGGTTTCAGCAATAGCGATTCTTTCTTTCACTCTGCTCCTATTGCTTCATCTGAAGCGAGGGCACCATCATCTCGAGCTGGTAATCAAGGACGTCATCAGTCACACTCAAGATCATCATGGATGGAGAGGCGAGTTGATAGTAACTTCAGACTTCCCTATTCATTGCAAACTCTGGCTATCGCCAGTGAAGGAAATAGTAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTCTTGCGTAGGGGAGGGAACCTTCGGTTTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCGTGACCGACACAGGGACATGCGACTTGATGTCGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAATGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATGGAAACTACTTAAACAGAGGAAGTATTCAGTTGAAGGGTCTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAGAGTTTGATAACGGAGATGACGTCGGAACACTTGATTGTGGCCATGATTACCATACCAACTGCATCAAACAATGGCTAATGCAGAGGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACGTGA 2130 0.4338 MQGTSGRIGSLAETLEFDCGSSSSNATVDQQICWDSTRNPVENQMPQFMLSPGDMNPLYANSINHQWKSMNNWRIGVPSSSGSHIEINSDEQQRDLGWSSSTSANAVAGSRLEQHFEPTSLLSLDNVNTSPMCMNNSNIHCVTQNIDLNASSVDTGCSMGQHLEHPGLNKSSGSVNEHIPPNVGSAPFSHPSGSNMVDNSGSRPGCSLDSRVSCKRKTVEGYVGQSSGGESSTGNQCTESSAWHTLPTQSNSCSSLSRSASSAQISSRPPPGVGNEVGVGSSEGFNNLNVAGSSNSFLRNSRLRINPSNQQDSIPYVAFSNGSVTRRSTIPSSSPMTQSFCPLDLRSAPSADDMVPQSQPLGTSSPSLHRNMPSFRWSGSSNSRNSHLSNSIIWSDGDNLLHEEGSSRSMSRSIFEHPMFVQAADLRNSVRNPTNRASSSANLNISGNVTSSLRSGSSSAINSPSVPSWVSRPNPLHHPRRLPGYVRRTLLSSSSGAAGGFSNSDSFFHSAPIASSEARAPSSRAGNQGRHQSHSRSSWMERRVDSNFRLPYSLQTLAIASEGNSRLVSELRSVLGLLRRGGNLRFEDFMIFDHSVFSGMADIRDRHRDMRLDVDNMSYEELLALEEWIGNVSTGLSEETIWKLLKQRKYSVEGSQCEAEPCCVCQEEFDNGDDVGTLDCGHDYHTNCIKQWLMQRNLCPICKTTGLAT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0839 709 MobiDBLite consensus disorder prediction 187 207 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 431 470 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 221 240 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 224 240 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 168 209 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 248 269 - -
Lele03g0839 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 706 IPR013083 -
Lele03g0839 709 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Lele03g0839 709 MobiDBLite consensus disorder prediction 349 384 - -
Lele03g0839 709 CDD RING-H2_TTC3 661 703 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 352 384 - -
Lele03g0839 709 SMART ring_2 662 702 IPR001841 -
Lele03g0839 709 MobiDBLite consensus disorder prediction 517 540 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 431 481 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 248 280 - -
Lele03g0839 709 FunFam E3 ubiquitin-protein ligase MBR2 631 707 - -
Lele03g0839 709 Pfam Ring finger domain 662 703 IPR001841 -
Lele03g0839 709 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 157 707 IPR045191 GO:0061630
Lele03g0839 709 SUPERFAMILY RING/U-box 661 705 - -
Lele03g0839 709 MobiDBLite consensus disorder prediction 517 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0839 Lele-ChrLele03 4905029 4908464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0839 213 709 C3H Transcription Factor Family AT2G15530 37.500 3.00e-77 260
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0867 28 5590110 5593115 Lele03g0839 03 4905029 4908464 CCT
Lele25g0873 25 5585800 5590462 Lele03g0839 03 4905029 4908464 CCT
Lele26g0885 26 5664529 5669839 Lele03g0839 03 4905029 4908464 CCT
Lele27g1206 27 19083783 19087627 Lele03g0839 03 4905029 4908464 CCT
Lele03g0839 03 4905029 4908464 Lele03g0839 03 4905029 4908464 ECH
Lele01g0846 01 4885758 4890800 Lele03g0839 03 4905029 4908464 hybridization
Lele02g0823 02 5018610 5022267 Lele03g0839 03 4905029 4908464 hybridization