Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0834 ATGAATACTCTTTCATTCTGTTACGCAACGGACCCCACCCCTTCACTTTTCCTTAGCAATCTCAGCTCACCGACCAGCCTCCATTTCTGCCCGTCTCCCTCCTTCAATTTCAGAAATGCAGTGTTACTGGCAATCTCATCAAAGTCCCCACTTCAAAGTTTACCTTCACGCCGATGGCTTACCAGAGCCTGCTCCGCCGCAACTTCCGAAATCGACATGGTTAAGAATAAGGAAGGTATTTATGCCCCCAAACAGAAAAAAGTCGTAGTCTTATGGGACCTTGATAACAAACCCCCTCGCGGACCGCCGTATCAGGCTGCCATGGCACTCAAACAGGTGGCTCAGCGCTTCGGTGACGTTGTCGACATGTCTGCCTACGCTAATCGTCACGCATTTATCCACTTACCCCAATGGGTTTTCCACGAACGCCGTGAACGGAAGGAAATAGACATTATGGAGCGTAAAGGAGTGATCACGCCTTCTGAGGCGTACGTTTGTGGGGTTTGCGGCCGCAAGTGTAAAACTAATATCGACCTCAAGAAGCATTTCAAGCAGCTCCATGAGCGAGAGCGTCAGAAAAAGCTGAATCGGATGAGATCACTAAGGGAGAGGTTAATATCTGGGAATCACAAGTACAATGAAGCGGCAAGGTCTTTGATTACCCCTAAAGTGGGATATGGGCTCGCATCCGAGCTAAGGCGTGCCGGAGTATTTGTGAAGACGGTAGAAGATAAACAGCAAGCAGCTGATTGGGCACTGAAGAGGCAGATGCAACACTCAATGAACCGAGGGATAGATTGGCTGTTTTTGGTATCCGACGATTCAGATTTTTCGGAGATGTTGAGGAGGGCGAGAGAGGCAAATTTGGGAACGGTGGTTGTGGGTGACTGGGACAGGGCATTAGGGCGAAACGCCGACTTATGGGTTCCTTGGGTTGGAGTTGAGAATGGAGAGCTTGGAGAGACAGATTTAATTCCCAAGAACAGAAGAGGGTCTTTTGCTGAAGATGATGGTTTCTTTTCAATATCTCATCATGATGGAGATGCTGTTGTTACGAGCGATTTGGATGGAATAGTAGACGAGCTTGTTGCAATGAGAACCGAGTTTAATGATCTGAGAAATGCAACATTTTCGGATGAGGATGAGGATGAGGAACAAGGGTAG 1164 0.4802 MNTLSFCYATDPTPSLFLSNLSSPTSLHFCPSPSFNFRNAVLLAISSKSPLQSLPSRRWLTRACSAATSEIDMVKNKEGIYAPKQKKVVVLWDLDNKPPRGPPYQAAMALKQVAQRFGDVVDMSAYANRHAFIHLPQWVFHERRERKEIDIMERKGVITPSEAYVCGVCGRKCKTNIDLKKHFKQLHERERQKKLNRMRSLRERLISGNHKYNEAARSLITPKVGYGLASELRRAGVFVKTVEDKQQAADWALKRQMQHSMNRGIDWLFLVSDDSDFSEMLRRAREANLGTVVVGDWDRALGRNADLWVPWVGVENGELGETDLIPKNRRGSFAEDDGFFSISHHDGDAVVTSDLDGIVDELVAMRTEFNDLRNATFSDEDEDEEQG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0834 387 Coils Coil 184 204 - -
Lele03g0834 387 ProSitePatterns Zinc finger C2H2 type domain signature. 166 187 IPR013087 -
Lele03g0834 387 Gene3D - 81 311 - -
Lele03g0834 387 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 49 328 - -
Lele03g0834 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 192 IPR013087 -
Lele03g0834 387 CDD PIN_LabA-like 174 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0834 Lele-ChrLele03 4875124 4876792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0834 6 387 C2H2 Transcription Factor Family AT5G52010 60.199 9.31e-162 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele03g0834 None None None