Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0816 ATGATCTCAATCACTTCCGCTGAGCTAAACTACCTTGTCTTCCGCTACCTTCACGAATCAGGTTTTACGCATTCAGCATTTGCTTTTGGGCATGAGGCAGGGATTGATAAAAGCAGAATTGATGGTAATTTAGTTCCACCAGGCGCTCTTGTAACATTCATACAGAAAGGAATTCAACATATTGAGCTGGAGGCGATGAGTGGTGACCTTAAGCTGATTGGTGTCTGTGTTAGGTATATACAGAGTGATGCAGACCCAGATGACGATTTCTCATTTATACAACCTGTTGACCTTATTACAAAGGATCCTAATGAACTACACAATATGGTTAAAGCCAAAAGGGAAAATCTACGTCAACATAAGTTTGAAGCAAATAAAAAGGTGAATGATTTCAGTCAAGACACTGCTAGTGAACAAGCTCAAGAAATGGACGAAGAGGGTAAGGAAAGGGAAAATGAACATGAAATTGATAAAACAAACCTAGAGAAAGAAGCAGAACAAGAAAAGGTTGAATGTAAAGAAATACAGCATTCAGATCAAAATGATGCGGAGAGAGATGAGGATAAGATTTTAGCTGAAAATATAGAAAATGAAACTCGTGGAGGACCTGAGCCAATGGAGATCTCCCCAAGTTCCTCGTTTTTGCCTATTGAGATTCCAACTTGTGACGTAAACATTTTGGAAGGTCACACCTCTGAGGTTTTCGCTTGTGCATGGAATCCATCAGGCTCGCTTCTTGCATCTGGATCTGGAGATTCAACAGCTCGGATTTGGAAAATTACAGAAGGAACTTTTAACACTAACATAAATGTTGTGGTGCTAAGGCACTTTAAAGGAAGAACTAGTGAGAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGGACATTACTGGCAACTGGCTCTTATGATGGTCAAGCAAGAATATGGAGTAGTGATGGAGACTTGAAGAGCACATTAAACAAGCATAAAGGTCCAATCTTTTCTTTGAAATGGAATAAGAAGGGGGATTATCTTCTTAGTGGCAGCGTTGATAAAACTGCTATTGTATGGGATATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCACCGACTCTTGATGTAGATTGGCGAAACAATGTTTCATTTGCAACATGTTCCACAGATAACATGATATATGTGTGCAAAATTGGAGAGAATCGGCCAATCAAAACTTTCTCAGGGCATCAGGGTGAAGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGATCACACTGCCAAAATTTGGAGTCTGAAGGAGGACAAGTATTTACATGATTTGAAGGAACATGTTAAGGAGATATATACCATTCGGTGGAGTCCTACTGGCCCCTGTACAAGCAACCCCAATCAGCCATTAGTTCTAGCAAGTGCCTCTTTCGACTCGACGATAAAGTTGTGGGATGTGGATCTAGGAAAAGTACTCTACAGCTTAAATGGTCATAGGGATCCTGTATATTCCATTGCATTCAGCCCAAATGGTGAGTATCTGGCGAGTGGCTCCATGGATAAGTGCATGCATATATGGTCTGTGAAGGAGGGGAAAATTGTGAAGACATATACCGGAAATGGTGGGATCTTTGAAGTTAGTTGGAACAACGATGGCGATAAAGTCGCTGCTTGTTATTCAAACAATATTGTTTGTGTATTGGATGTCCGAATGTAG 1725 0.4064 MISITSAELNYLVFRYLHESGFTHSAFAFGHEAGIDKSRIDGNLVPPGALVTFIQKGIQHIELEAMSGDLKLIGVCVRYIQSDADPDDDFSFIQPVDLITKDPNELHNMVKAKRENLRQHKFEANKKVNDFSQDTASEQAQEMDEEGKERENEHEIDKTNLEKEAEQEKVECKEIQHSDQNDAERDEDKILAENIENETRGGPEPMEISPSSSFLPIEIPTCDVNILEGHTSEVFACAWNPSGSLLASGSGDSTARIWKITEGTFNTNINVVVLRHFKGRTSEKSKDVTTLDWNGDGTLLATGSYDGQARIWSSDGDLKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSFLASCSDDHTAKIWSLKEDKYLHDLKEHVKEIYTIRWSPTGPCTSNPNQPLVLASASFDSTIKLWDVDLGKVLYSLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKIVKTYTGNGGIFEVSWNNDGDKVAACYSNNIVCVLDVRM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0816 574 MobiDBLite consensus disorder prediction 141 187 - -
Lele03g0816 574 Pfam WD domain, G-beta repeat 319 354 IPR001680 GO:0005515
Lele03g0816 574 Pfam WD domain, G-beta repeat 492 530 IPR001680 GO:0005515
Lele03g0816 574 Pfam WD domain, G-beta repeat 274 313 IPR001680 GO:0005515
Lele03g0816 574 Pfam WD domain, G-beta repeat 443 488 IPR001680 GO:0005515
Lele03g0816 574 Pfam WD domain, G-beta repeat 225 259 IPR001680 GO:0005515
Lele03g0816 574 Pfam WD domain, G-beta repeat 400 437 IPR001680 GO:0005515
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 363 IPR001680 GO:0005515
Lele03g0816 574 Coils Coil 149 178 - -
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Lele03g0816 574 PANTHER WD40 REPEAT PROTEIN 4 573 IPR045183 GO:0003714|GO:0016575
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 313 IPR001680 GO:0005515
Lele03g0816 574 CDD WD40 224 530 - -
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 359 - -
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Lele03g0816 574 Gene3D - 2 66 - -
Lele03g0816 574 SUPERFAMILY WD40 repeat-like 223 572 IPR036322 GO:0005515
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 263 - -
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 497 IPR001680 GO:0005515
Lele03g0816 574 Pfam LisH 8 33 IPR006594 GO:0005515
Lele03g0816 574 MobiDBLite consensus disorder prediction 126 187 - -
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 535 - -
Lele03g0816 574 SMART WD40_4 270 313 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 315 354 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 220 259 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 533 571 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 491 530 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 357 395 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 398 437 IPR001680 GO:0005515
Lele03g0816 574 SMART WD40_4 440 488 IPR001680 GO:0005515
Lele03g0816 574 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 105 - -
Lele03g0816 574 Gene3D - 216 574 IPR015943 GO:0005515
Lele03g0816 574 SMART Lish 5 37 IPR006594 GO:0005515
Lele03g0816 574 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Lele03g0816 574 PRINTS G protein beta WD-40 repeat signature 475 489 IPR020472 -
Lele03g0816 574 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Lele03g0816 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 439 - -
Lele03g0816 574 FunFam WD40 repeat-containing protein HOS15 215 574 - -
Lele03g0816 574 ProSitePatterns Trp-Asp (WD) repeats signature. 341 355 IPR019775 -
Lele03g0816 574 ProSitePatterns Trp-Asp (WD) repeats signature. 475 489 IPR019775 -
Lele03g0816 574 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0816 Lele-ChrLele03 4785511 4790082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0816 402 572 Miscellaneous Gene Families AT5G08390 30.058 4.20e-17 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0816 03 4785511 4790082 Lele03g0816 03 4785511 4790082 ECH
Lele01g0827 01 4780877 4786192 Lele03g0816 03 4785511 4790082 hybridization
Lele02g0801 02 4884948 4889266 Lele03g0816 03 4785511 4790082 hybridization