Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0813 ATGGGAAGAGTGAAGCTTCAGATCAAGAAGATCGAGAACGCAACAAATAGACAGGTCACCTTCTCAAAGAGGAGAAATGGACTCATCAAGAAAGCTTATGAACTTTCTGTACTCTGTGACGTTGATGTGGCTCTCATCATGTTTTCTCCGTCCGGAAAAGCAAGTCTCTTCTCTGGGGGTAAAAGCATTGAAGAAATTTTTGAACGATATCTTGATCTTCCTGAACAAGAACGGGTTAGGGTGCAAAATCAAGAGCATATTCACAAGGTTCTTGCTAAGCTGAAAGCCGAAGCCGATGAAATATACCGAGCCCCTAGCCCGATGATTACAGACTCCCAGATTGAGGGCATTAAAAGGGAATTTTTTATTTGCAAGTCTCGTTTTAAAGAGATGGAGAAGAGGCTAAGGATATTCGAAGGAGACCCTTATGAAATCACGACACTGTACGAGGCTGAATATCGCGAGAACGTCCTCCTGGAGACTCTCAAACAAGTGCAGCTGCGAAAACGAGCTCTGGAGGAAGAGTATATTTCACATGCAGCTACAGCTCCCCAGGTGCATCTTGAGAAACCCGTAGATGCAGATGGATTTGGTAACGGAAGCCTGAAGAACACGGTGGATTGGCTTCCGCAGGTTCAGAACCTGAACTTTACGGATTATGCCGACGGTTTTCTCCATTTCGGAGATAACCAACAGTCACAAGGAAATGCTGTACATGTGGTTGATATGTTGTCGCCAGCTTCAACTCTGATGCATGATCAAAGTCACTCGAGTCCCGTAGACGGTTTGAACCAGGATGATTTTGGACAAGTTGATATCAATTCCACCCCTTGGGGACCACTCCAACCTCCAGTTAGTCAGGATAACATCTGGAATTCCAATTTACGTCGCTATTTGTTAATCAATGGCATTGCTTTGTTCCTCAATTTGCCATTTAATTTCGTCTTCCAGATTAAATGTCAGCTATGCCGTTCTCCGCAGTCATTGCAATCATAG 996 0.4428 MGRVKLQIKKIENATNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGKASLFSGGKSIEEIFERYLDLPEQERVRVQNQEHIHKVLAKLKAEADEIYRAPSPMITDSQIEGIKREFFICKSRFKEMEKRLRIFEGDPYEITTLYEAEYRENVLLETLKQVQLRKRALEEEYISHAATAPQVHLEKPVDADGFGNGSLKNTVDWLPQVQNLNFTDYADGFLHFGDNQQSQGNAVHVVDMLSPASTLMHDQSHSSPVDGLNQDDFGQVDINSTPWGPLQPPVSQDNIWNSNLRRYLLINGIALFLNLPFNFVFQIKCQLCRSPQSLQS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0813 331 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele03g0813 331 Coils Coil 155 175 - -
Lele03g0813 331 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lele03g0813 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Lele03g0813 331 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele03g0813 331 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele03g0813 331 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele03g0813 331 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Lele03g0813 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Lele03g0813 331 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele03g0813 331 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lele03g0813 331 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0813 Lele-ChrLele03 4773497 4775958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0813 1 226 Type I MADS-box Gene Family AT1G22130 42.678 8.39e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele03g0813 SRF-TF 1.4e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0813 03 4773497 4775958 Lele03g0813 03 4773497 4775958 ECH
Lele02g0797 02 4870415 4871702 Lele03g0813 03 4773497 4775958 hybridization