Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0803 ATGGCTCTCGAAGCTATGAAGTCGCCCACTGCCGCCGCCCCGTCCTTCCCCTTCCAACCCTCCGACCTCCACCACCTGGAGCCCTGCCCCTGGACCAAGCGAAAGCGTTCCAAGCGTAGCCGCCTCGACCACCCGGACTGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGACTCCACCGGTTCCGCCGCCTCACGCGACCGCCACACCTCGCCGGCTCCCAAGCTCGCTTATAACTGCTCCGTCTGCAACAGAGCCTTTTCTTCCTACCAGGCTCTTGGCGGACACAAGGCCAGTCACAGGAAACTCGCCGGTGAAGATCACGGCACTTCTTCCAACGTCACCAGTACTGCTTCTACCGCCACCTCCGCATCCAACGGTGGAGGCAGGCTCCACGAGTGCTCAATCTGCCACAAGTCCTTCCCTACCGGACAGGCCTTGGGCGGACACAAGCGTTGCCACTACGAGGGCGGCTCTAGCAGCAGCGTTGCCACCTCCGAAGGTGTGGGGTCCGCCCACCGCCGCTTCGATCTCAACATCCCCGCCTTCTCCTTGACGGCCGACGAGGAGGTGGAGAGCCCCCACCCACTGAAGAAGCCCCGCCTTTCCATGACAACCACCGACGAAATCCCTCAACGCGCGTGA 660 0.6318 MALEAMKSPTAAAPSFPFQPSDLHHLEPCPWTKRKRSKRSRLDHPDCSEEEYLALCLIMLARDSTGSAASRDRHTSPAPKLAYNCSVCNRAFSSYQALGGHKASHRKLAGEDHGTSSNVTSTASTATSASNGGGRLHECSICHKSFPTGQALGGHKRCHYEGGSSSSVATSEGVGSAHRRFDLNIPAFSLTADEEVESPHPLKKPRLSMTTTDEIPQRA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0803 219 MobiDBLite consensus disorder prediction 104 131 - -
Lele03g0803 219 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Lele03g0803 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Lele03g0803 219 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Lele03g0803 219 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 187 IPR044653 GO:0003700
Lele03g0803 219 MobiDBLite consensus disorder prediction 192 219 - -
Lele03g0803 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Lele03g0803 219 SMART c2h2final6 137 159 IPR013087 -
Lele03g0803 219 SMART c2h2final6 83 105 IPR013087 -
Lele03g0803 219 Pfam C2H2-type zinc finger 82 107 - -
Lele03g0803 219 Pfam C2H2-type zinc finger 137 160 - -
Lele03g0803 219 SUPERFAMILY beta-beta-alpha zinc fingers 83 159 IPR036236 -
Lele03g0803 219 MobiDBLite consensus disorder prediction 113 131 - -
Lele03g0803 219 Gene3D Classic Zinc Finger 80 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0803 Lele-ChrLele03 4713499 4714158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0803 1 215 C2H2 Transcription Factor Family AT1G27730 51.653 1.99e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele03g0803 zf-C2H2_6 1.6e-12 CL0361