Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0797 ATGATCGTTGCCAAGTCTACTTTAACCTCTTGGTCTCCGCAATTTACTGAAGCTAACGTTCCTCCTCCCCCTTTTCCTTATCCTCTTTTCTCACTCTCTTCCTTTTCCTCCTCTTCTCAGATTGTCTGCTTCAGTATGGCATTCGCAGGAACAACCCAGAAATGCATGGCCTGTGAGAAAACTGTTTATCTGGTTGATAAGTTAACTGCAGATAACCGAGTGTACCACAAGGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAATTCTTTCGAGGGAGTTCTTTACTGCAAACCCCACTTCGACCAATTGTTCAAAAGAACCGGCAGCCTTGAGAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAAGCATTGATAATGAGAAGCCTGCAGCGACCAAAGTGTCAAGTATGTTTGGTGGAACCAGGGATAAATGTGCTGGTTGTCAGAAAACAGCTTATCCAACGGAGAAGGTTACTGTGAATGGAACTCCATACCACAAGAGTTGTTTCAAATGTTGCCATGGAGGGTGTGTTATAAGTCCTTCCAACTACATTGCACACGAGGGCAAACTCTACTGCAAACATCACCATATGCAGCTGATCAAGGAAAAGGGCAATTTAAGCCAGCTTGAAGGTGACCGCGACAAGAGTTCAGTGCATGATTAA 696 0.4397 MIVAKSTLTSWSPQFTEANVPPPPFPYPLFSLSSFSSSSQIVCFSMAFAGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPEKSIDNEKPAATKVSSMFGGTRDKCAGCQKTAYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHMQLIKEKGNLSQLEGDRDKSSVHD 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0797 231 FunFam LIM domain and actin-binding 1 149 219 - -
Lele03g0797 231 CDD LIM2_SF3 155 215 - -
Lele03g0797 231 FunFam LIM domain and actin-binding 1 49 119 - -
Lele03g0797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 220 - -
Lele03g0797 231 CDD LIM1_SF3 51 113 - -
Lele03g0797 231 PANTHER OS06G0237300 PROTEIN 47 138 IPR045268 -
Lele03g0797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 121 - -
Lele03g0797 231 Pfam LIM domain 55 109 IPR001781 -
Lele03g0797 231 Pfam LIM domain 155 209 IPR001781 -
Lele03g0797 231 ProSiteProfiles LIM domain profile. 153 213 IPR001781 -
Lele03g0797 231 Gene3D Cysteine Rich Protein 49 119 - -
Lele03g0797 231 Gene3D Cysteine Rich Protein 150 219 - -
Lele03g0797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 48 80 - -
Lele03g0797 231 SMART lim_4 154 206 IPR001781 -
Lele03g0797 231 SMART lim_4 54 106 IPR001781 -
Lele03g0797 231 ProSitePatterns LIM zinc-binding domain signature. 55 89 IPR001781 -
Lele03g0797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 180 - -
Lele03g0797 231 ProSiteProfiles LIM domain profile. 53 113 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0797 Lele-ChrLele03 4665025 4666476 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele03g0797 LIM 2.4e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0816 25 5254527 5256773 Lele03g0797 03 4665025 4666476 CCT
Lele26g0828 26 5314101 5317763 Lele03g0797 03 4665025 4666476 CCT
Lele27g1262 27 19436313 19438919 Lele03g0797 03 4665025 4666476 CCT
Lele03g0797 03 4665025 4666476 Lele03g0797 03 4665025 4666476 ECH
Lele01g0804 01 4664450 4665773 Lele03g0797 03 4665025 4666476 hybridization