Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0792 ATGCCTTCAGGTGGTGGCGCCGAGGTGCTCGAACTAGACCCTGCTGTGAAAGGCGAGGGTTTCGACAGCAAAGCTGCTCTACCTGGCGGTGGTTGCAGCGACGGTGACAAAATAGATCTGAAGACGTTGATTGAAGAGCTGGATTCGGTTCATGTGCCTTCCGTGTTCGTCTGTCCAATCTCGTTAGAGCCCATGCGAGAGCCTGTGACCCTTTGCACGGGTCAGACCTATGACAGATCCAACATTCTCAAATGGTTCGCTTTGGGTCATAACACCTGCCCCACAACGATGCAGGAGCTTTGGGACGATTCAGTGACGCTGAACAGAACTCTCAGTCAATTAATCCATAGTTGGTTCTCACAGGAGTACCTCTTATTGAAGAAGCAGTTCCAGGATGTGCAAGGAAGAACTCTGGAGCTCTTAGAGGCACTCAAGAAGATGAAGGGTCAAGCCAGAGTTCAAGCTCTTCGAGATCTCAGGCAGATTGTCACTGCCAATGCGTCCACAAGGAAGACAGTTGTAGAAAATGGAGGGCTTGATTTAATTTCTTCTTTACTGGGCCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCAATTGGAATTCTAGCGAACTTGGATTTGAATTCAGAGTGGAAGAGAAATCTGATGCATCCGGCGAAGATATCATTGTTGGTCGATGTTATGAACGAAGGAACGATTGATACCAAGATGAACTGCGCTAAATTGATTGAAGCATTGTTGATGGAGGTGAATGAGTCAGAGACGGAGATTTTGTCAAGCTTGAGTCTTCTGGTCGGATTATTGAGGTTAGTGAGGGATAAGAAACACCCAACAGGGGTCATAACTGGACTCATGTTACTGAAGACAATCTGTTCCCACGAATCAGTGAGAAGCTCCATGGTAAGCGTAGGAGGAGTTTCTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCATGAGTCCCTGGAGATAGCCCTGTACATTCTAGAGGTACTGTCAACACTTCCAGAGGGAAGACTGGCATTGAAAGAGTGCCCGAACATCATACCCAATGTGGTGAAGTTAATGATGAGGGTATCAGAGAGCAGCACTCAATTCGCATTGTCAATATTGTGGGCTATCTTCAAGCTTGCTCCTGAGGAATGTGCATCACAGGCCGTGGAGGCAGGTTTGGCACCCAAGTTGCTGCTTGTGATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGATGTCTACCGAGTTCTTGAAAATGTGCAGTCTCAATTACTCCACTAGTCTCTTGATCTCTAAATGAGAGAAAGAACAAAAAGCTGATTATGCTCGAAACTTGATCCTATTTAGCCTTTTCCCAGTGCCTTTGGAGATGAACACGTGCACCTTGAATTTTGAAAATGCCAGTTTAGTTTGCTTAGTGCAGAGAAGTATGATTAAGGCATGTTCCCTGGGCTTTTGTGGAAGCTCAGAGCATCTAGTGGTCTAA 1476 0.4648 MPSGGGAEVLELDPAVKGEGFDSKAALPGGGCSDGDKIDLKTLIEELDSVHVPSVFVCPISLEPMREPVTLCTGQTYDRSNILKWFALGHNTCPTTMQELWDDSVTLNRTLSQLIHSWFSQEYLLLKKQFQDVQGRTLELLEALKKMKGQARVQALRDLRQIVTANASTRKTVVENGGLDLISSLLGPFTSHAVGSEAIGILANLDLNSEWKRNLMHPAKISLLVDVMNEGTIDTKMNCAKLIEALLMEVNESETEILSSLSLLVGLLRLVRDKKHPTGVITGLMLLKTICSHESVRSSMVSVGGVSQLIELLPSLNHESLEIALYILEVLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIFKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSLNYSTSLLISKXEKEQKADYARNLILFSLFPVPLEMNTCTLNFENASLVCLVQRSMIKACSLGFCGSSEHLVV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0792 491 Gene3D - 136 430 IPR011989 -
Lele03g0792 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 132 IPR013083 -
Lele03g0792 491 SUPERFAMILY ARM repeat 97 422 IPR016024 -
Lele03g0792 491 SUPERFAMILY RING/U-box 47 121 - -
Lele03g0792 491 SMART Ubox_2 55 118 IPR003613 GO:0004842|GO:0016567
Lele03g0792 491 CDD RING-Ubox_PUB 56 98 IPR045210 -
Lele03g0792 491 PANTHER WDSAM1 PROTEIN 48 424 IPR045185 GO:0061630
Lele03g0792 491 ProSiteProfiles U-box domain profile. 51 125 IPR003613 GO:0004842|GO:0016567
Lele03g0792 491 Pfam U-box domain 52 121 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0792 Lele-ChrLele03 4631975 4634497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0792 4 429 U-box Gene Family AT3G49810 59.624 1.44e-177 504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0792 03 4631975 4634497 Lele25g0795 25 5077841 5083163 CCT
Lele03g0792 03 4631975 4634497 Lele26g0807 26 5136283 5140092 CCT
Lele03g0792 03 4631975 4634497 Lele27g1281 27 19590751 19595243 CCT
Lele03g0792 03 4631975 4634497 Lele28g0794 28 5071075 5075986 CCT
Lele03g0792 03 4631975 4634497 Lele03g0792 03 4631975 4634497 ECH
Lele01g0799 01 4634526 4635833 Lele03g0792 03 4631975 4634497 hybridization
Lele02g0771 02 4706746 4708059 Lele03g0792 03 4631975 4634497 hybridization