LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g0760	ATGACGCCTGTTTATCTGAACCAACCAGCTCGTTCTCTCCCTCTCGCCGATCACCAACAAGAAGAAGATAAAAACCATCTCTTCATCAGTTCTCCTACTACCCAGGATCCAACCAGTTCTGTCTCATGTCCTACTTCCTGCATATTTGAAGACTCACAAGCTAGGGATAACGGAAAACAACGGCATGATCAAGAGGCAGGATCATCTTCTTTTTCACATATGGATGATTATTGGAGCAGCGGTTGTGGCCCTAAATATGATGAAAAGGACAAGGAAGGAATCAACAGAAGAAGCAGCAGCGGTCACAAGGATTCATCAGCAAAATGGATGTGTTCAGAGATGTGGTTAATGCAAAAAACCAAACCTAGCAGCAGTACGGAGTCTAATCACAAGGCATCATCAAGTTATAATCCAACATGGCAAAACCAAAGACGTGGCTCTAATTACAAGTATAACAACGGCAATAACATCAATAGGGTTTGTTCAGATTGCAGCACAACCAGCACTCCACTTTGGAGGAGTGGCCCTAATGGTCCCAAGGTGCAGTCACTCTGCAATGCCTGTGGGATTAGGCAGAGAAAAGCAAGGAAAGCCATGGAAGAAGCTGAGTGGTGTGAAAAGACCAGAATAGGGCAGAACAAGGAGAAGAAGAGCCAGGTAATAAAGAACAAGTGGAAGGGTGGACAGTCTGAGTCTCGAGGGAAAAGGAAAGTGGGTTTCCAGGAATTTGAATTCAGTTTCAGGAGGAATTCAGTTTTTCAGGAACCAGTGTTCCCACGGGATGAAGTTCTCGAGGGGGCGATGCTTCTCATGGATTTATCTTGTGGCTTTTTCCCCTTTTAG	843	0.4496	MTPVYLNQPARSLPLADHQQEEDKNHLFISSPTTQDPTSSVSCPTSCIFEDSQARDNGKQRHDQEAGSSSFSHMDDYWSSGCGPKYDEKDKEGINRRSSSGHKDSSAKWMCSEMWLMQKTKPSSSTESNHKASSSYNPTWQNQRRGSNYKYNNGNNINRVCSDCSTTSTPLWRSGPNGPKVQSLCNACGIRQRKARKAMEEAEWCEKTRIGQNKEKKSQVIKNKWKGGQSESRGKRKVGFQEFEFSFRRNSVFQEPVFPRDEVLEGAMLLMDLSCGFFPF	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g0760	280	MobiDBLite	consensus disorder prediction	52	105	-	-
	Lele03g0760	280	MobiDBLite	consensus disorder prediction	54	69	-	-
	Lele03g0760	280	CDD	ZnF_GATA	160	194	IPR000679	GO:0006355\|GO:0043565
	Lele03g0760	280	Pfam	GATA zinc finger	161	197	IPR000679	GO:0006355\|GO:0043565
	Lele03g0760	280	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele03g0760	280	ProSiteProfiles	GATA-type zinc finger domain profile.	155	193	IPR000679	GO:0006355\|GO:0043565
	Lele03g0760	280	SMART	GATA_3	155	217	IPR000679	GO:0006355\|GO:0043565
	Lele03g0760	280	ProSitePatterns	GATA-type zinc finger domain.	161	188	IPR000679	GO:0006355\|GO:0043565
	Lele03g0760	280	MobiDBLite	consensus disorder prediction	82	103	-	-
	Lele03g0760	280	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	155	202	-	-
	Lele03g0760	280	PANTHER	GATA TRANSCRIPTION FACTOR 22-RELATED	1	277	-	-
	Lele03g0760	280	MobiDBLite	consensus disorder prediction	120	145	-	-
	Lele03g0760	280	Gene3D	-	156	237	IPR013088	GO:0006355\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g0760	Lele-ChrLele03	4441608	4442909	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g0760	106	192	C2C2-Gata Transcription Factor Family	AT4G26150	47.191	2.03e-16	76.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Lele03g0760		GATA	3.4e-14	CL0167