Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0727 ATGGATGGCGATAATAGGAATCGAGTTCCAAAACCCGGCGAAGCAGCCACGACGGAGAAGAAAACAGCTAATGCAGGCGAAGTGATGGTAGCGATCTCTGTGCAAGACTCCAAAGTGGCTGAATGCAATGACGTCAATACTGGGTATGCTGCATCGAAGTCTCCACGTTTAAACGGTGCTTCCCCTGAAATACGGTTCAGTCCCAGCCCAAGGAAGCCACCCAAGCATCCTCTTGGCAACGAACACCCTGTTCTAAGAAAGTCTTTGTCGAGGTCAGTGTATTCAAAACCCAAATCAAGATTTGGTGAACAACCTTATCCTGTTGATGCCACATTGTTCGAGGATAACATTGATTTCACATTGCAAGAACAGTTGGCTGTTCATTCACCATATAGAAACTCCTTCAACAAGGGTTCACCAAATAACAAATCCAGGATTGTTAATAGAACAGCTTCCATAACTTCTTCCACCATCACTCCCAAGACTCCCTTCATGGCATCTCCAGGGCCTGCTGGGGAGGATGAGGACGAAATATTTTATAGGAAAGTTGAATTGTGTAAAGGGAAGCGCAGGAGAGTAACCACTAAGGTTTTGATCGAATGGATTGTATTTGTATGCATCATGGGTTGTCTAGTGGTTAGCTTGGCTGTTGATAAACTGAAAAACACAATCATTTGGAGTTTGGAGTTTTGGAAATGGTGTGTGCTTGTGTTGGTGATCTTCTGTGGCATGTTAGTCACAAACTGGATAATGCACATCATCGTGTTCTTGATTGAACTGAACTTTTTGCTGAGGAAAAAGGTGCTATATTTTGTTCATGGACTGAAGAAGAGTGTTCAGACATTGTCTCTAAAGATATTAGCATCAAAATTCCACGTCAGATCTTTCTTTGATAGAATTCAGGAATCAATCTTTTATCAGTATGTTCTGCAGACACTGTCAGGGCCTCCACTTATGGAGGAGGCAGAGAAGGTAGGGAGATCACCTAGTATTGGTCAATTTAGTTTTAGGAGTACAAAAGGCAAAGGAGGCGTAAAGAAAGAGGTCATTGATGTAGCAAAGCTTCACCGGATGAAACAAGAGAAGGTTTCTGCTTCCACCATGAAGATTTTGGTTGATGCGGTGACCAATTCAAGGTTGTCCACTATCTCCAATGCACTAGATGAAACTTTTGAACAAACTGATAAAGAGATTACCAATGAGATGGAAGCAACTGCTGCTGCCTATCACATTTTCAGAAATGTTGCAAGCCCTGGTTCCTTGTACATTGATGAAGATGACCTTCGGAGGTTCATGATTAAGGAAGAAGTGAATCTGGTGTTTCCCCTGTTTGATGGAGCAGAAACTGGACGAATTGACAGAAAGGCCTTAACAAGATGGGTGTTGAAGGTTTATCAGGAGCGCAAAGCATTGGCACATGCCTTGAGTGACACCAAAACAGCAGTGAGACAGCTAAGTAAGCTTGTGTCAGGGATTCTGGTGGTTGTGACCATAGTTGTGTGGCTTCTACTGATGGAGATTGCCACTACAAAAGTACTTTTGTTCTTCTCATCACAGCTAGTACTCGTTGCTTTCATGTTTGGAAACACATGCAAGAACATATTCGAAGCTATTATCTTTGTGTTTGTGATGCATCCCTTTGATGTTGGTGATCGATGTGTTGTTGATGGTGTTCAGCTACTGGTTGAAGAAATGAACATATTGACAATGGTCTTCTTGAAGCTTGATAATGAAAAGGTGTATTATCCAAACTCAGTTCTAGCCACGAAACCCATTAGCAATTATTACAGAAGTCCAGATATGGGAGACACTGTAGAGTTCTGTGTTGATTTCATGACACCATTGGAGAAGATTGGGGCTCTGAGAGAAAAAATAAAGAGGTACTTGGAGAGAAATCCACAACATTGGCATCCTAGTCACAATGTTGTAGTAAAGGAGATTGAAAATGTGAACAAGATAAAGATGGCTCTGTATGTAACCCACACAATGAACTTCCAAGAGTGGGTGGTGAAGAACAAGCGAAGAACTGAACTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATACAATCTTCTTCCCCAAGCGGTTCATCTCAGCAATACATCTCATTTGTCTGATCACTCAATCTTGTGA 2145 0.4177 MDGDNRNRVPKPGEAATTEKKTANAGEVMVAISVQDSKVAECNDVNTGYAASKSPRLNGASPEIRFSPSPRKPPKHPLGNEHPVLRKSLSRSVYSKPKSRFGEQPYPVDATLFEDNIDFTLQEQLAVHSPYRNSFNKGSPNNKSRIVNRTASITSSTITPKTPFMASPGPAGEDEDEIFYRKVELCKGKRRRVTTKVLIEWIVFVCIMGCLVVSLAVDKLKNTIIWSLEFWKWCVLVLVIFCGMLVTNWIMHIIVFLIELNFLLRKKVLYFVHGLKKSVQTLSLKILASKFHVRSFFDRIQESIFYQYVLQTLSGPPLMEEAEKVGRSPSIGQFSFRSTKGKGGVKKEVIDVAKLHRMKQEKVSASTMKILVDAVTNSRLSTISNALDETFEQTDKEITNEMEATAAAYHIFRNVASPGSLYIDEDDLRRFMIKEEVNLVFPLFDGAETGRIDRKALTRWVLKVYQERKALAHALSDTKTAVRQLSKLVSGILVVVTIVVWLLLMEIATTKVLLFFSSQLVLVAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTMVFLKLDNEKVYYPNSVLATKPISNYYRSPDMGDTVEFCVDFMTPLEKIGALREKIKRYLERNPQHWHPSHNVVVKEIENVNKIKMALYVTHTMNFQEWVVKNKRRTELVMEIKKIFEELNIRYNLLPQAVHLSNTSHLSDHSIL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0727 714 MobiDBLite consensus disorder prediction 48 101 - -
Lele03g0727 714 Pfam Mechanosensitive ion channel 487 692 IPR006685 GO:0016020|GO:0055085
Lele03g0727 714 PIRSF Memb_At2g17000 2 283 IPR016688 -
Lele03g0727 714 PIRSF Memb_At2g17000 278 712 IPR016688 -
Lele03g0727 714 SUPERFAMILY Sm-like ribonucleoproteins 536 595 IPR010920 -
Lele03g0727 714 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 279 705 IPR016688 -
Lele03g0727 714 FunFam Predicted mechanosensitive ion channel 546 595 - -
Lele03g0727 714 MobiDBLite consensus disorder prediction 1 15 - -
Lele03g0727 714 MobiDBLite consensus disorder prediction 1 26 - -
Lele03g0727 714 Gene3D - 546 595 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0727 Lele-ChrLele03 4294136 4296787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0727 19 703 Mechanosensitive Ion Channel Family AT5G12080 55.777 0.0 778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0727 03 4294136 4296787 Lele03g0727 03 4294136 4296787 ECH
Lele03g0727 03 4294136 4296787 Lele04g0728 04 4460346 4462430 ECH
Lele01g0729 01 4282368 4285019 Lele03g0727 03 4294136 4296787 hybridization
Lele02g0711 02 4304328 4307042 Lele03g0727 03 4294136 4296787 hybridization