Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0709 ATGGCTTCTCCGAGTTCTGCGAATGTGAGTGATCATGAGTGTTTAAGGTACAAAGGCGTGAGGAAGCGAAAATGGGGCAAATGGGTATCTGAAGTCAGACTTCCCAACAGCCGTGAACGCATTTGGCTCGGCTCTTATGATTCTGCAGAAAAGGCTGCTCGAGCCTTTGATGCTGCACTCTTCTGTCTACGTGGTGAGCGAGCCAATTTCAACTTCCCTGACACCCCTTTTCTCTTTCATCTTCCTCGTGATCATCATCAATCTCTTACCCATCACCAGATTAAGCTTCTTGCTTCTTCCTTTGCCAAACAGTTCCACCACCACGAGCAGCCGCCGCCGGAGCCACCCCATCATCATGAAGAACCATCATCCGCAGAATTTCATTCTAGTCCTGGATCAGTGTCCGAGACAGGTTCCAGTACGTGTACTTCTTCGCCTTCTTGTGTGCAAGTGGAAGTGGACCACGGCGATGACAGCAGCATGGATTGGTCATTTTTGAACTCGCTTGATTATTACAATGACCTTGGTGCCATCGACTGTGGACTCTATTCCGAGTTAGATTACTTCCAGTTTGGTGAGTCGACGTCCGAGTTATCTCTCATATCCCCAGCTGTGCCTTTCGACTACAATGCCCAAGAAAATCAATACGCAGATGCTTATTCTCACAATTCATCATCGTTCCTTTGGAACTTCGGATACGAGGGTTCATAG 711 0.4796 MASPSSANVSDHECLRYKGVRKRKWGKWVSEVRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGERANFNFPDTPFLFHLPRDHHQSLTHHQIKLLASSFAKQFHHHEQPPPEPPHHHEEPSSAEFHSSPGSVSETGSSTCTSSPSCVQVEVDHGDDSSMDWSFLNSLDYYNDLGAIDCGLYSELDYFQFGESTSELSLISPAVPFDYNAQENQYADAYSHNSSSFLWNFGYEGS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0709 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 152 - -
Lele03g0709 236 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Lele03g0709 236 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lele03g0709 236 MobiDBLite consensus disorder prediction 107 125 - -
Lele03g0709 236 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Lele03g0709 236 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lele03g0709 236 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Lele03g0709 236 MobiDBLite consensus disorder prediction 105 147 - -
Lele03g0709 236 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lele03g0709 236 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lele03g0709 236 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Lele03g0709 236 MobiDBLite consensus disorder prediction 126 147 - -
Lele03g0709 236 PIRSF PTI6 124 219 IPR017392 GO:0003700
Lele03g0709 236 PIRSF PTI6 2 87 IPR017392 GO:0003700
Lele03g0709 236 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0709 Lele-ChrLele03 4190694 4191404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0709 16 231 AP2-EREBP Transcription Factor Family AT1G19210 41.284 1.99e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele03g0709 AP2 2.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0709 03 4190694 4191404 Lele03g0709 03 4190694 4191404 ECH
Lele03g0709 03 4190694 4191404 Lele04g0713 04 4334097 4334810 ECH
Lele01g0712 01 4181654 4182361 Lele03g0709 03 4190694 4191404 hybridization
Lele02g0697 02 4194751 4195467 Lele03g0709 03 4190694 4191404 hybridization