Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0698 ATGGCCAAACAGATTGCAACAGGCAGCAGTGCTTTGACTTCTCTCCTAGTGTTCATTCAGAGCCATCGTGTAGATGTAAAAGGCCTTGAGCTAAGCCAGAGATCTAGAAATGCTGTTATGGAGAATGACTATATCGATGACATGGACATCGAAGCCCTGCATTCGTTGTGGCCTGAAGATATTGGAACTGATGTTGGAAAAAAATTTAATATGGAAAAACCTGGAAAGGACCAAGATATGTTGGAAGAGATTATAATGATGGGGGAGTCAACTGTAGTTGATTTCACTCATCTAATGGAGCTCACAAATTATACAGATAAGGGATCTTCTCAACTCTCCCACCTTATGAAACACTTGGAGTATAAGCATGCCAATGCCGTGCGTCTTCTAAGAGAAGAACTTGACAACCTAAGCAAACAGCGGAGCGAGGTTGAGCTGAGGAAGTTGGAGATATTGAAGGAGCATCGATTTGAAGAAGAAACAACATATGGGGACAAACGTTCAGTTTCTATTTTGGATGAAATATATGATTTATGGCAAGATGTACCACGCAGGAAATGCAATGTTGTTGTTCAAAACAATAGAATTGAAATAGATGCCGAGTATGATACGACTGTATATTGGAAACAGCGGGCGCTGCATTTGGAAAAGATGTTGGAGGCAAGTATTCAAAGAGAGCAGATACTTGCAGAGAAGTTGCAAGAAAGTATAAAGAATCTTGAAAAGCAGTCCTCACCTGTAGAAGAACTGTCCCAGATTCTGAAGAGGGCTGATAATTTCTTGCATTTTGTACTCCAGAATGCACCTGTGGTTATGGGTCATCAGGACAAAGAGTTGCGATATCGATTTATCTATAATCATTTTCCAAGTTTGCACGAGGAGGACATCATTGGAAAAACAGATGTTGAAATTTTTACAGGATCTGGTGTTAAAGAATCTCAAGATTTTAAGAGAGAAGTTCTAGAAAAAGGCTTGCCTGCGAAAAGGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCCTGATTTATGTAGAACCTGTCTTCAGCAAGACAGGGGAGACGCTAGGAATAAACTATATGGGAATGGATGTCACAGATCAGGTGAGAAAAAGAGAAAGGATCATGAAAATCCGGGAAGAAATCGCGGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATCCACATTACAGAGGAGACTATGAGAGCAAAACAAATGTTGGCAACCATGTCTCATGAGATAAGATCCCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAGGACAAAACTCGATCGCGAGCAAAGACAACTCTTGGGTGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGTTAGAAGCAACCAAGTTCCGTCCAAGGGAGGTAGTAAAGCATGTACTCCAGACTGCTGCTGCTTCACTGCAGAAAATGTTAACCTTAGAAGGACATGTAGCAGATGATGTACCAACTGAGGTCATTGGAGATGTTTTAAGGATTCGGCAAATCCTCACAAATTTAGTCAGCAACGCTATCAAGTTTACTCATAAAGGCAAGGTTGGTATAAATCTTTACGTTGTACCAGAGCCAGCTTTTGCTAAAGCAGAAGTAAGCCTCCTGAAGATTAGTGCAGACCACTCTAGTATTTCAGGGAATGGAGTAGAAGAGAAGTATCATTCAACATCTCAAAATAGGAGCAACCAAAATCATGCATCGAGTGATGAAGATAGATCTCCAGTTAAAAGCAAATGCTTAATGAATGGAGGTACTGAGGAGCAACCTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTCTATGACACAGGAATTGGAATACCAGAGAAGGCTATACCTACGTTATTTAAAAGGTACATGCAAGTTAGTGCAGACCATGCAAGAAAGTATGGTGGGACAGGGCTGGGACTAGCAATATGCAAACAACTGGTCGAGTTAATGGGCGGTCGTCTTACTGTGACTAGCAAAGAACACAGTGGTTCTACTTTTACCTTCATATTACCGTACAAGGTTCCAACTCTTTGTGATCATTCTGATGAGTCCTCAGATACAGAGGATGATGATGATGATGCATCTGATGATACCACGGAGGGCTTCTTCAAATTTCAAGCACCCAATTTGGGCTCTTTGTTCTCCTCCCATGGATCTAGCAGGATCCAAAAGTTATTACCTCAAAAAATTGGGTGTGCAGCCTCGCATAAATTCAATGGGTTTTCAGAGAATTCCTACTCAATTTCCCATAATAATGACAGATCGAAAGAAATAACTTCAGTTGAGGATGCATCCTTGATAACTGATGGCCCGGATATATCTGAATGTGCATGTTCATCGAGTCACAGCCCAGAGATGGTGAATGAAAATGTAGATTCAAGAAGCAAATTACGAATTGGCAGTGCAGATTCTTCATACGACACGGAGGTAGATCAAGATCGGGAAGCAATAGCAACAATGTCAAGAGAACAAGCACGTCAGAGTCAAGAAAGAGCAGAGATTTCCTCGCAATGCGTCACTAGCAGCAGTACTTCAGAAGTAGCAAAACCAAATTCAAAGCCCAAGATCCTTCTCGTTGAGGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCAATTAGGTCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCCGTTCAGCGCCAGAGTTTTGACCTAATTCTTATGGATGTGTGCATGCCAGTTATGAATGGTCTGCAAGCAACAAAACTGATTCGTTCTTTTGAAGAAACGGGTAACTGGGATGCTGCAAGAGAAGCTGGAATTGAGATAAATCTACCAGCTTCATGTTTGCATAATGGTGAATTTTGTTTACTTGCCACCGAGTCGAACCACATCCCCATTATTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTGTTGCAAATGGTATGGACTCATTTGTATCAAAACCTGTGACTTTCCAAAAATTGAAGGACTGTCTTGAACAGTACTTACAGTGA 3093 0.4103 MAKQIATGSSALTSLLVFIQSHRVDVKGLELSQRSRNAVMENDYIDDMDIEALHSLWPEDIGTDVGKKFNMEKPGKDQDMLEEIIMMGESTVVDFTHLMELTNYTDKGSSQLSHLMKHLEYKHANAVRLLREELDNLSKQRSEVELRKLEILKEHRFEEETTYGDKRSVSILDEIYDLWQDVPRRKCNVVVQNNRIEIDAEYDTTVYWKQRALHLEKMLEASIQREQILAEKLQESIKNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKTGETLGINYMGMDVTDQVRKRERIMKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSRTKLDREQRQLLGVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGHVADDVPTEVIGDVLRIRQILTNLVSNAIKFTHKGKVGINLYVVPEPAFAKAEVSLLKISADHSSISGNGVEEKYHSTSQNRSNQNHASSDEDRSPVKSKCLMNGGTEEQPHSTETTVWIRCDVYDTGIGIPEKAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHSGSTFTFILPYKVPTLCDHSDESSDTEDDDDDASDDTTEGFFKFQAPNLGSLFSSHGSSRIQKLLPQKIGCAASHKFNGFSENSYSISHNNDRSKEITSVEDASLITDGPDISECACSSSHSPEMVNENVDSRSKLRIGSADSSYDTEVDQDREAIATMSREQARQSQERAEISSQCVTSSSTSEVAKPNSKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRQSFDLILMDVCMPVMNGLQATKLIRSFEETGNWDAAREAGIEINLPASCLHNGEFCLLATESNHIPIIAMTANALSESAEECVANGMDSFVSKPVTFQKLKDCLEQYLQ 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0698 1030 FunFam Putative histidine kinase 5 394 471 - -
Lele03g0698 1030 SMART REC_2 880 1025 IPR001789 GO:0000160
Lele03g0698 1030 CDD HATPase_EvgS-ArcB-TorS-like 522 697 - -
Lele03g0698 1030 ProSiteProfiles Histidine kinase domain profile. 413 700 IPR005467 -
Lele03g0698 1030 MobiDBLite consensus disorder prediction 706 726 - -
Lele03g0698 1030 FunFam Histidine kinase 5 248 383 - -
Lele03g0698 1030 MobiDBLite consensus disorder prediction 709 723 - -
Lele03g0698 1030 Pfam His Kinase A (phospho-acceptor) domain 408 471 IPR003661 GO:0000155|GO:0007165
Lele03g0698 1030 CDD HisKA 408 467 IPR003661 GO:0000155|GO:0007165
Lele03g0698 1030 CDD REC_hyHK_CKI1_RcsC-like 882 1025 - -
Lele03g0698 1030 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 460 700 IPR036890 -
Lele03g0698 1030 MobiDBLite consensus disorder prediction 573 619 - -
Lele03g0698 1030 Coils Coil 127 154 - -
Lele03g0698 1030 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 24 1029 - -
Lele03g0698 1030 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 517 698 IPR003594 -
Lele03g0698 1030 Coils Coil 223 250 - -
Lele03g0698 1030 SMART HKATPase_4 517 700 IPR003594 -
Lele03g0698 1030 Pfam Response regulator receiver domain 882 949 IPR001789 GO:0000160
Lele03g0698 1030 ProSiteProfiles Response regulatory domain profile. 881 1029 IPR001789 GO:0000160
Lele03g0698 1030 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 405 471 IPR036097 GO:0000155|GO:0007165
Lele03g0698 1030 Gene3D - 472 702 IPR036890 -
Lele03g0698 1030 FunFam Histidine kinase 5 874 1030 - -
Lele03g0698 1030 MobiDBLite consensus disorder prediction 846 875 - -
Lele03g0698 1030 SMART HisKA_10 406 471 IPR003661 GO:0000155|GO:0007165
Lele03g0698 1030 MobiDBLite consensus disorder prediction 573 591 - -
Lele03g0698 1030 Gene3D - 394 471 - -
Lele03g0698 1030 Gene3D PAS domain 248 382 - -
Lele03g0698 1030 MobiDBLite consensus disorder prediction 847 875 - -
Lele03g0698 1030 PRINTS Bacterial sensor protein C-terminal signature 684 697 IPR004358 GO:0016310|GO:0016772
Lele03g0698 1030 PRINTS Bacterial sensor protein C-terminal signature 625 639 IPR004358 GO:0016310|GO:0016772
Lele03g0698 1030 PRINTS Bacterial sensor protein C-terminal signature 660 678 IPR004358 GO:0016310|GO:0016772
Lele03g0698 1030 Gene3D - 873 1030 - -
Lele03g0698 1030 SUPERFAMILY CheY-like 878 1030 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0698 Lele-ChrLele03 4126595 4131236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0698 40 1029 Histidine Kinase Gene Family AT5G10720 58.200 0.0 1100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele03g0698 HATPase_c 3.4e-28 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0700 01 4120171 4124622 Lele03g0698 03 4126595 4131236 hybridization
Lele02g0686 02 4121887 4127033 Lele03g0698 03 4126595 4131236 hybridization