Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0674 ATGAAAGGGTGTCGGTCGCTTTCATCTCCCACGTTGGCATGGACTCTTACTGCAATTATTTCCCTTTATGGTTTTGTCAACTCCATGTGTCTAAGTCTTCAGGAATCTTCAAATAATCAGAGTTCATGGAATTTATTAGATCTCAAGGGGAATGGAAGGATCCCATATGGGATCTGGTTATCGAGAGCTGACCTGTTCCTCGCAAATAAAAAATCAATGGCATTTCGTCTTAACTATAGCTGTCCCGGTTACTGCAATTACCTTGAATTCAATGCCTTCAACTGTAAAATGTCTTGTGGGGGCTACATGGTTCCATTTTTGTTGCTTTTCAGGACTAAAGGGGGAGACTTGTTTAATTTGGCAGAAGATCCCGGCAGAGATCTAACAATTAATCTGCAAAAGAACGTGTCATATGATTCATATCTCCATCAGAACCACAAGAAGAACTATAATCCTCAAATTGAGAGTTACCTATCAAGGGTTGAACAGTCTCCAACAAAATCTATGCAAAACGCACTCTCACCATCACTGAAGGCATTAATTGCTTATGAACTTTTGAGGCATTCAGATGATGATGTGAAAGTTGCGGTAGCCTCTTGCATCAGCGAAATAACAAGGATAACTGCTCCTGATGCTCCTTATGACGATGATCCAATGAAGGAGGTGTTTCAATTAATTGTATCTTCATTTGAAAATCTATATGATACATCAAGCCGATCATATGCTAAGAGAACATCCATTATTGAAACTGTTGCAAAGGTCAGATCGTGTGTGGTAATGCTAGATCTTGAGTGTGACGGGCTGATTGTAGAGATGTTTCAGCATTTCTTTAAGGCTGTTAGCTGTAAATCACTGAATCTCCTCTTCCTTATGAATGAACAACTAAAGAAACACAATATTGTGCCAGAAAATGAAATCCAACTAGTATCAAGGGGACATCATCCAGAAAATGTTTTATCATCCATTGAGACTATTATGATCCTTGTCATAGAAGAAAGTGAAGAGATATCTATGGACCTGCTTTCTCCAATCTTAGCCAGTTTGAAGAAAGACAATGAGGATTTTTCACCAAATGCTCAAAATTTGGGGGGGAGAGTCCTGGAATGTTGTGCAACAAAGCTTAAACCATACTTAGTGCAAGCAGTGACCACCTTGGGCATTTCTTTAGATGATTATAGTAAGGTACTTGCTTCTATATGTCAAGAGACTTCTGGCAGCTTGGAGCAAAATGATGCATGTGCTTCCAGTGAAAATGCGGAAGATGAGGGAAAGTCAGCAAAAGCAACGTTGAATGAGTCAACACAGGTGATTGAAGAGGATGCTGAAAAAGCTACCCCTCCTCAACAAGTCACTGTTGTTGATGGCAGGTCTTCTAAGTCTGTCACGAGCAATGGCATTGTACAGTTCAGTGAAGGTGACTTGTTGGAAGATCCAAAGTCCTTAAAGAAGCAAGAAGATGTAAATAATTCTGATCACTCTAAAGGTATCAATATATCAAGTAATGAGGATCCCGATAATGTCAGCACTAAAAAAGTTGACAACACAGAACAAAAGCCAGAACAAGCCACCAAGAGGAGAAGAAAACAATATCATTCTACTAAATTGGCAGAACCTTCTGAGGGTTCAGCTGTTGCTCATGGCAGGGATGCTGAGAAAATGCTTGACTTAAAAAGTAACAAGAAGGACCTTTGTAGTTCACTACATGAAAACCATTCTACTGAGGTAGCAGGACCTTCAGAGAATGACAAGGAGAGTCATGCTAAGACTTCATCAGGAAAGGTAGGAATTAATGAGTCTGAAGCTGCGGCTTCTCCTCCCAGGGAAAGCCATCCTGATGAAATTCGTTCCAAAAAAACTGGAAGACCAAATACGAAAGGAAGGCCTGCCAAAGAAGCGGTAATTTCCTCTGAGGATGTTACCAAAAAAGTGTCAGAAGTAACAAGTGATTCAGATGCAAAACCTACCAATCGGTCTGCCAAGAAGGCGCCTGGTGGGAGCTCTGATGGGAAAAAAGCTAATGTGGTAGATTCAGTTGAAAAAACAAGTGGGAGTATAAGTGATCCAGAGGACAAAAGGCGGTTAGCTGGATCCTCTTTGAAGCACCTGAAGGAAAATAAAAGGCAGAAGCAGGGCAAAGTCTTGGTTTTGGATGTAGCAAAATCTGCTAAAGATGAAGAAAAGGGCCGGCTTGGCTCAGCGGTAGGCTTGCTTGCCGTGGGGTCTGAGGTCGCGGGTTCGAATCAACCTCTCTGCAAAGCAGGGGAAACAGTATCTTCACCAAAGTCAGGTACGAGATTGACTAAAGATGAACAATGTTTAGGGGAAACGTCCAAGACCAATTTGAAGAGGAAACCTACTCCAGGTCCAGGAAAAGAAAATAAGTCTGATATCAAGGTATATGGTGAAAATCTTGTTGGTGCACGGGTTAAAGTTTGGTGGCCAGAAGATCGTGAGTTTTACAATGGTACCATTGAGTCCTTTGATTCTGCCAAAGGGAAGCACAAGGTTGCATACGATGATGGTGATATAGAAATATTAAATCTTAGAAAGGAACAATGGGAGCTTGTTCAGGAAGGAGACGATCATGCAGGCCCTGATGTTTCAGCTGATATGCCCTCAAATAAGAAAAGGAAAAGTGCTGGTCAGTCAACTAAGGGAAGAAACACGGATACTCCTACCAAGAGTGTAGGAGCCGCATCCAGCAAATCGAAGGGTGCACCCACGAAGTCTGGCCATAAGACGAAAGATGGCGGCAAAGTTAATAGCAAATCCAAAGATTCCAAGAGTATTGGCAAATCGGAGGATGGGATTAGTAGAAAATCAAAGGATCATGCTTCGAAAAGTGGTTCCAATAAATCTGCTGATGCTGTACCAGTAATGACTGAATCCGATGATGATGACATTGATGCTCCCAAGACCAATAAATCAAAGAACGATGATATTAGCCAACCAAAATTTTCTTCCAAGACCAAGCAAGAAACCTCTAAAAAACCCAAGAAAGAAACCTCAAGTACTGCTTCTAAGGGTAGACCCCCCAAAAGTGGGGGAAAGTCTAATGTTAATGCCTCTAGCAAGGTCAAATCTGGTTCTTCATCAAAGACAAAAGATGCTAAGAATGAGTTCTCGGGAGATTCAACAGAAAAGGCAAAAGACACGAAGGGTAAAGCATCAAGTTCATCCAAGGCACAAGGAAGTTCTGCTGCCAAACCTGGAAAGAAGCGTCAAAGAGGCTAG 3234 0.4165 MKGCRSLSSPTLAWTLTAIISLYGFVNSMCLSLQESSNNQSSWNLLDLKGNGRIPYGIWLSRADLFLANKKSMAFRLNYSCPGYCNYLEFNAFNCKMSCGGYMVPFLLLFRTKGGDLFNLAEDPGRDLTINLQKNVSYDSYLHQNHKKNYNPQIESYLSRVEQSPTKSMQNALSPSLKALIAYELLRHSDDDVKVAVASCISEITRITAPDAPYDDDPMKEVFQLIVSSFENLYDTSSRSYAKRTSIIETVAKVRSCVVMLDLECDGLIVEMFQHFFKAVSCKSLNLLFLMNEQLKKHNIVPENEIQLVSRGHHPENVLSSIETIMILVIEESEEISMDLLSPILASLKKDNEDFSPNAQNLGGRVLECCATKLKPYLVQAVTTLGISLDDYSKVLASICQETSGSLEQNDACASSENAEDEGKSAKATLNESTQVIEEDAEKATPPQQVTVVDGRSSKSVTSNGIVQFSEGDLLEDPKSLKKQEDVNNSDHSKGINISSNEDPDNVSTKKVDNTEQKPEQATKRRRKQYHSTKLAEPSEGSAVAHGRDAEKMLDLKSNKKDLCSSLHENHSTEVAGPSENDKESHAKTSSGKVGINESEAAASPPRESHPDEIRSKKTGRPNTKGRPAKEAVISSEDVTKKVSEVTSDSDAKPTNRSAKKAPGGSSDGKKANVVDSVEKTSGSISDPEDKRRLAGSSLKHLKENKRQKQGKVLVLDVAKSAKDEEKGRLGSAVGLLAVGSEVAGSNQPLCKAGETVSSPKSGTRLTKDEQCLGETSKTNLKRKPTPGPGKENKSDIKVYGENLVGARVKVWWPEDREFYNGTIESFDSAKGKHKVAYDDGDIEILNLRKEQWELVQEGDDHAGPDVSADMPSNKKRKSAGQSTKGRNTDTPTKSVGAASSKSKGAPTKSGHKTKDGGKVNSKSKDSKSIGKSEDGISRKSKDHASKSGSNKSADAVPVMTESDDDDIDAPKTNKSKNDDISQPKFSSKTKQETSKKPKKETSSTASKGRPPKSGGKSNVNASSKVKSGSSSKTKDAKNEFSGDSTEKAKDTKGKASSSSKAQGSSAAKPGKKRQRG 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0674 1077 CDD TUDOR 806 848 IPR002999 -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 605 620 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 491 505 - -
Lele03g0674 1077 FunFam Binding protein 800 852 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 1031 1055 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 631 648 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 683 710 - -
Lele03g0674 1077 SUPERFAMILY Tudor/PWWP/MBT 803 842 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 506 523 - -
Lele03g0674 1077 Gene3D - 802 852 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 475 490 - -
Lele03g0674 1077 Pfam Sister chromatid cohesion protein PDS5 protein 153 380 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 875 907 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 407 710 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 751 770 - -
Lele03g0674 1077 SMART TUDOR_7 801 863 IPR002999 -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 965 1006 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 450 469 - -
Lele03g0674 1077 SUPERFAMILY ARM repeat 167 392 IPR016024 -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 575 589 - -
Lele03g0674 1077 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 464 1045 IPR039776 GO:0007064
Lele03g0674 1077 MobiDBLite consensus disorder prediction 909 949 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 1007 1030 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 856 1077 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 747 796 - -
Lele03g0674 1077 MobiDBLite consensus disorder prediction 544 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0674 Lele-ChrLele03 3970854 3981883 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0678 01 3963595 3976892 Lele03g0674 03 3970854 3981883 hybridization
Lele02g0664 02 3985680 3995398 Lele03g0674 03 3970854 3981883 hybridization