Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0673 ATGGCAAAGTGTCACCGGAACAACGTTGGACCCTTGATTCTCGATCGCCACAATCCTAATACGAATGCAGCTGTCGGTGGCCACTTCCGCCTATGGAATGCGCTCTCGGCCTCCTCATTCCGTCGTATCATTTTTGACGCCGTGAGCTGCGGCGGCAGCTCCCGTTATCAACACTCCCACTGTGACGACTTCAGCTCCACCGCCTCAACCACGACATCAACCTCTGGAAACTCTAAGGAGAAGCACCGAGAACAGAGGCAGGGACCATCTGAGTCTAGGCGTAGCTCCAAAGGGAGGTCCGAGAAACTATCGGATCTTCTGCTTATAGCAGCTTCCGAGAATCGTGCCGAAACGAAAAAGAAGGAAGAGGCGTCGGACGAGCTGAAGCAAATTGTGCAGGAGTTGCAAGGAGAGGACTTGACGAAGCGGCAAGCGGCAGCATCAAATGTTAGATTGCTCGCCAAGGAAAACTTGCAAGTCAGAGGGACTCTGGCAATGCTCGGAGTCATTCTTCCTCTGGTTGGAATGCTTGACTTAGAAGACGCTAACTCTCAAATCGCTTCTCTGTATGCATTGCTCAATCTTGGGATCGGCAACGATGCAAATAAAGCAGCCATTGTCAAAGTTGGCGCTGTTCACAAGATGCTAAAGCTCATTGAATCTCCTACTGCTCTGGATTCATCAGTCTCTGAAGCGATTGTTGCAAATTTCCTTAGCTTGAGTGCTTTAGATTCAAATAAACCAATTATTGGATCCTCTGGTGCAATCCCTTTCCTGGTTAGAGCCCTTAAAAATTTAGATAACACATGTAGCCCTCAAGCTAAGCAAGATGCTCTGCGAGCACTGTACAATCTTTCAATCCTCCCAACCAATATCTCACTCATTTTGGAAACCGATTTGGCTCCACATCTGATAAACACAATAGGAGACATGGAGCTGAGTGAAAGAGTCCTTCCCATTTTGAGCAATCTGGCATCAACACCAGAAGGCCGAAAAGCTATCAGTGCTGTGCCAGACGCATTCCCAATTCTGGTTGATGTATTAAACTGGACAGATTCACCTGGATGCCAAGAGAAGGCATCCTACATTTTGATGATTATGGCACACAAAGCTTATTATGGTGACAGGCAAGCCATGATTGAAGCTGGGATTATATCATCATTGCTTGAGCTGACACTTCTGGGTACCCCATTGGCACAAAAACGAGCCTCAAGGATATTGCAGTTTCTGAGAGTAGACAAAGGCAAGCAGGTTTCTGGGAGTTGCAGTGGAAACTTGCATGCAAATGTCTCTGCTCCTATGTTTGGTGGCTCTTCGTCATCTTGTACAAAGCCACATGGAGGTGGGAGAAGGTCTGTGGAGGGAGAGGAAGATATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAATTGGTTCGACAGAGTTTGCAGAATAACATGAGGAAAATTGTGAAGAGGGCTAACATCCATCAGCAGTTCGTTCCATCAGAACATTTTAAGTCACTCACTTCAAGTTCGACTTCAAAGAGCCTGCCGTTTTGA 1539 0.4711 MAKCHRNNVGPLILDRHNPNTNAAVGGHFRLWNALSASSFRRIIFDAVSCGGSSRYQHSHCDDFSSTASTTTSTSGNSKEKHREQRQGPSESRRSSKGRSEKLSDLLLIAASENRAETKKKEEASDELKQIVQELQGEDLTKRQAAASNVRLLAKENLQVRGTLAMLGVILPLVGMLDLEDANSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPTALDSSVSEAIVANFLSLSALDSNKPIIGSSGAIPFLVRALKNLDNTCSPQAKQDALRALYNLSILPTNISLILETDLAPHLINTIGDMELSERVLPILSNLASTPEGRKAISAVPDAFPILVDVLNWTDSPGCQEKASYILMIMAHKAYYGDRQAMIEAGIISSLLELTLLGTPLAQKRASRILQFLRVDKGKQVSGSCSGNLHANVSAPMFGGSSSSCTKPHGGGRRSVEGEEDMMSEEKKAVKQLVRQSLQNNMRKIVKRANIHQQFVPSEHFKSLTSSSTSKSLPF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0673 512 MobiDBLite consensus disorder prediction 59 76 - -
Lele03g0673 512 SMART arm_5 157 197 IPR000225 GO:0005515
Lele03g0673 512 SMART arm_5 288 326 IPR000225 GO:0005515
Lele03g0673 512 SMART arm_5 199 242 IPR000225 GO:0005515
Lele03g0673 512 SMART arm_5 243 287 IPR000225 GO:0005515
Lele03g0673 512 Coils Coil 114 138 - -
Lele03g0673 512 MobiDBLite consensus disorder prediction 59 101 - -
Lele03g0673 512 SUPERFAMILY ARM repeat 127 413 IPR016024 -
Lele03g0673 512 Gene3D - 124 410 IPR011989 -
Lele03g0673 512 MobiDBLite consensus disorder prediction 437 462 - -
Lele03g0673 512 Coils Coil 453 473 - -
Lele03g0673 512 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 512 - -
Lele03g0673 512 MobiDBLite consensus disorder prediction 77 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0673 Lele-ChrLele03 3968328 3970189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0673 100 411 U-box Gene Family AT2G23140 32.484 2.85e-36 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0674 25 4256202 4258206 Lele03g0673 03 3968328 3970189 CCT
Lele26g0682 26 4349839 4351835 Lele03g0673 03 3968328 3970189 CCT
Lele27g1415 27 20425467 20427467 Lele03g0673 03 3968328 3970189 CCT
Lele03g0673 03 3968328 3970189 Lele25g0663 25 4168417 4169067 CCT
Lele03g0673 03 3968328 3970189 Lele26g0672 26 4273050 4273694 CCT
Lele03g0673 03 3968328 3970189 Lele27g1424 27 20507647 20508298 CCT
Lele03g0673 03 3968328 3970189 Lele28g0656 28 4187695 4188339 CCT
Lele02g0663 02 3981105 3983011 Lele03g0673 03 3968328 3970189 hybridization