Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0671 ATGGCACTACTTTTAATCTCGAATCCCTTTTCAAGGTCTGGGTCTGGGTGCATTTTCCGCTCTGGTGTTTGGATTTGTGTATCGGAAATGTCAATACTGCAGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAAGGACAATCTTGAAGAAGAGTTTGCATTGATCCGTGAAATTGTCGACGAATATAATTACATCGCCATGGACACGGAGTTCCCCGGAGTGGTTCTTCGCCCGGTGGGTAATTTTAAAAACATCAATGAATATAACTACCAAACACTGAAGGACAACGTTGATATGTTGAAGTTGATCCAATTGGGACTCACTTTCTCCGATGAGCGTGGAAATCTTCCTACTTGCGGCACTGACAAATGTTGGATTTGGCAATTTAACTTCCGCGAGTTTAACGTTAGCGAAGACATCTTTGCGAGTGATTCAATTCAACTACTGCGCCAATGTGGAATTGATTTTAAGAAGAACAACGAGAAGGGCATTGACGTGAACCGATTTGGGGAGCTTCTTATGTCTTCAGGGGTGGTGTTGAACAATGAAGTCCATTGGGTCACATTTCATAGCGGGTATGATTTTGGTTACCTCCTTAAGTTATTGACGTGCCGTAGCTTGCCTGATACACAGTCGGGATTCTTTACTTTGATCAACGTGTACTTCCCTACGGTGTATGATATCAAGCATCTGATGAAGTTCTGCAACAACCTCCATGGTGGATTGAACAAACTTGCAGAACTGTTGGAAGTTGAGAGGATTGGTGCTTGCCATCAAGCCGGGTCCGATAGCTTACTCACATCTTGTACATTTAGAAAGTTAAGGGATGTGTTCTTCAATGGTTCCACGGAGAAATATTCAGGTATCATGAGGAGCCTGGTTGAGAGGCTTCGAGCAAGATCAGATCTCAGGCCCATCTACAGCATTGGTGAATCAGACGATGAAGCTGATATTTTGCCCGGAATACACGAGCCAACTCAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATACGAAAGAAAATTGTTGTCAAGCTTGTGGAGAAAATGGAGATCTTTTGAACTGTGAAACATGCACTTATGCCTATCATCCTAGGTGTTTACTTCCACCACTTAGAGCTCCTGTTCCAGGCAACTGGAGGTGCCCTGAATGTGTAAGCCCACTTGATGATATTGATAAGATATTAGACTCTGAGATGCGACCTACTGTAGCTGACGACAGTGATACCACAAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGCGACTATCATATCTCCATTGCATATGCTATGGTTCTTTTGAACTTAGGGTGCCAGAAAAGGAGTTTCTGAAGGCTTTCAAGTTACATCCCCGCCTAAAGACAAAAGTAAATAACTTTGACCGTCAAATGTCATCAGTTAATACTTCTGATGAAGACTCTGTTGCCATTCGACCTGAATGGACCACTATTGATCGGATTATTGCTTGCAGGGGTGATGATGATAAGGAATATATTGTGAAATTGAGAGAGCTTTCATATGATGAATGCTATTGGGAGTTCGAGTCTGATATTTCCGAGTTTCAGGCAGAAATTGAAAGATTCAACAGATTTCAGTCTAGGTCTAGGAAACTTGTTATTTCGAATAAGCAGAAAGGCAGTGTTAAGGATGGAGCTGAATTGATGAGGCATCTGAAAGAATTTTTTCATTTTCAACAGGTTATGTATGTTGGATCTTCTCAAGCCCGTGCTGTTATACGTGAGTATGAATTTTACTTTCCCAAGAACCAGAAGAAGTTAAAGAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGAGATTATCAACCTTGACACAGCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGACGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATCGAAGCAATATTCTAGCAGACATCGTGTGCATTTGACTGGGACTCCTCTGCAGAATAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGACGCTGGGAAGTTTGGAAGTTTGGAGGAATTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCACAAAATGCTGGCCCCCCATCTTCTTAGAAGGGTCAAGAAAGACGTCATGAAGGAGTTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCGAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCATGGCGGAGCGCAGGGTGAAGTAAAAGTAAATGAAGTAACAAACAATGGACTTAATTGTGCACCCAAGGCTGCAAGTAGACCTAGTAATAAATCAGGGGAGACAGACACCCAAATGTCTGATCAACTGCCTCAAGTAGAAGCAATAGCTTCAGACAAGATTTCCGTTGCTGATAGTGACCCAAATCGTTTGGAATTGATTCGGCTTTACAATGCGATGTGTAAAGTCATGGACGAAAACAACGATGCAAGAAAACCAGCAGAAGTAGACGTGAAGAGCTTGCAGGCAATTGAGCCCATTTGTGAAGACATCAATATAATTCTAACACCCTCACAGCAAAGTCACCCTTCTGAAGAAAAGCCGTCATTGATTCCAGAGAATAAATCAGAGGTTTCGCTACAAAATGAAATTGTGGTTTCTCAAGACGGCAAACCTGAATCAGTAGGTGACGAGAGAACAGACATGGTAACGGAGTGTCAACTTACAAAAGAAAACAGCGAGGGCCCTGTCGAAGAGAAGGAAACACCAAGTTTTTTAGAAACAAGCGGACGTGATGTAGAAATGGTTGAAGCTGAGAATGATGCTGAACTGAATGAAAAGAAAGAAAAATCTGACGCAGAGGCCATCATGTTGGATGATTAA 2961 0.412 MALLLISNPFSRSGSGCIFRSGVWICVSEMSILQKGDSVQIREVWKDNLEEEFALIREIVDEYNYIAMDTEFPGVVLRPVGNFKNINEYNYQTLKDNVDMLKLIQLGLTFSDERGNLPTCGTDKCWIWQFNFREFNVSEDIFASDSIQLLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNNEVHWVTFHSGYDFGYLLKLLTCRSLPDTQSGFFTLINVYFPTVYDIKHLMKFCNNLHGGLNKLAELLEVERIGACHQAGSDSLLTSCTFRKLRDVFFNGSTEKYSGIMRSLVERLRARSDLRPIYSIGESDDEADILPGIHEPTQEKFERIVRSDTKENCCQACGENGDLLNCETCTYAYHPRCLLPPLRAPVPGNWRCPECVSPLDDIDKILDSEMRPTVADDSDTTKLGSKQIFVKQYLVKWKRLSYLHCICYGSFELRVPEKEFLKAFKLHPRLKTKVNNFDRQMSSVNTSDEDSVAIRPEWTTIDRIIACRGDDDKEYIVKLRELSYDECYWEFESDISEFQAEIERFNRFQSRSRKLVISNKQKGSVKDGAELMRHLKEFFHFQQVMYVGSSQARAVIREYEFYFPKNQKKLKKKKSGQIVSESKQDRIKFDVLLTSYEIINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSSKQYSSRHRVHLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSEQKEYYKAILTRNYQILTRHGGAQGEVKVNEVTNNGLNCAPKAASRPSNKSGETDTQMSDQLPQVEAIASDKISVADSDPNRLELIRLYNAMCKVMDENNDARKPAEVDVKSLQAIEPICEDINIILTPSQQSHPSEEKPSLIPENKSEVSLQNEIVVSQDGKPESVGDERTDMVTECQLTKENSEGPVEEKETPSFLETSGRDVEMVEAENDAELNEKKEKSDAEAIMLDD 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0671 986 ProSitePatterns Zinc finger PHD-type signature. 344 385 IPR019786 -
Lele03g0671 986 Pfam CAF1 family ribonuclease 44 165 IPR006941 -
Lele03g0671 986 Pfam Chromo (CHRromatin Organisation MOdifier) domain 490 537 IPR023780 -
Lele03g0671 986 SMART PHD_3 343 386 IPR001965 -
Lele03g0671 986 Pfam SNF2-related domain 583 774 IPR000330 GO:0005524|GO:0140658
Lele03g0671 986 Gene3D - 741 793 IPR027417 -
Lele03g0671 986 CDD CD2_tandem 487 537 - -
Lele03g0671 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 389 IPR013083 -
Lele03g0671 986 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 39 294 IPR039637 GO:0004535|GO:0030014
Lele03g0671 986 Pfam PHD-finger 344 386 IPR019787 -
Lele03g0671 986 Gene3D - 563 740 IPR038718 -
Lele03g0671 986 MobiDBLite consensus disorder prediction 792 814 - -
Lele03g0671 986 MobiDBLite consensus disorder prediction 965 986 - -
Lele03g0671 986 Gene3D - 27 296 IPR036397 GO:0003676
Lele03g0671 986 SUPERFAMILY Chromo domain-like 474 538 IPR016197 -
Lele03g0671 986 SUPERFAMILY Ribonuclease H-like 41 284 IPR012337 -
Lele03g0671 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 731 IPR027417 -
Lele03g0671 986 Gene3D - 390 472 - -
Lele03g0671 986 Gene3D - 475 537 - -
Lele03g0671 986 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 595 696 IPR014001 -
Lele03g0671 986 SUPERFAMILY Chromo domain-like 356 436 IPR016197 -
Lele03g0671 986 SMART chromo_7 389 459 IPR000953 -
Lele03g0671 986 SMART chromo_7 487 540 IPR000953 -
Lele03g0671 986 CDD CD1_tandem 388 467 - -
Lele03g0671 986 FunFam Putative CCR4-associated factor 1 7 31 297 - -
Lele03g0671 986 ProSiteProfiles Zinc finger PHD-type profile. 341 388 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0671 Lele-ChrLele03 3949320 3959045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0671 620 767 RAD5 or RAD16-like Gene Family AT5G22750 27.711 1.39e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele03g0671 SNF2_N 1.1e-41 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0676 01 3941014 3952215 Lele03g0671 03 3949320 3959045 hybridization
Lele02g0660 02 3965863 3966684 Lele03g0671 03 3949320 3959045 hybridization