Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0667 ATGTTATGTTTTTCGAGTCTGGACCCACTTCACGCACATAAAGGAATTGAGAAAAAGAAGTTGCTGCTGCTAACGTCACAGGCATCAAATTTGGCTGATGATAATACTGGAGATGATTTGATCTATTTTGATCCTTATCTTGGTCTCCATGAGAAGGCCCAGACCAGGGTCTTTGACTGTCATATAACCAGACAAGATGATGCAGAAGCTTCAATTATAGGGTTTGCATTCTTTGGCTGCAAATGACATTTCCACAAACACTACGCGAAAAAGAATACGTTTCCTTTTTTCCCTAGCATGGCAAGACCACAACAGCGATATCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTATTGAAGACGAGGATATGGCTCGGTACATTTGAAACTGCAGAAGATGCAGCCAGAGCGTATGATGAAGCAGCGAGGCTGATGTGTGGAACGAGAGCAAGAACCAATTTCCCTTACAACCCCAATGCGTCTCAATCATCATCTTCTAAGCTTCTCTCTGCAACTCTGACGGCTAAACTGCATAGATGTTATATGGCTTCGCTTCAAATGACGAGACCTACAGTATCGGAACCTGTACGAGTAACTTCGCCGAATGTTGTGTCCACGAGCACCAGCAACTCGTCCACTGTGAAAAGCAGAGAAACCAGTATTACAATGTTGGGAGGGAAGAGAGCAAAGGAGGAGGAGGAGGAGGCTGAAGAATCAGAGGCAAAATGGGGTGTGAAGAAGGTGAAGGTGGAAAGTGATGAGCAATTCAAGCCACTTGAAGAGGATCATATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGGTCTATTGAGCTCTGCTCTGTCATGCCACCTCAGTAA 885 0.4531 MLCFSSLDPLHAHKGIEKKKLLLLTSQASNLADDNTGDDLIYFDPYLGLHEKAQTRVFDCHITRQDDAEASIIGFAFFGCKXHFHKHYAKKNTFPFFPSMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPTVSEPVRVTSPNVVSTSTSNSSTVKSRETSITMLGGKRAKEEEEEAEESEAKWGVKKVKVESDEQFKPLEEDHIEQMIEELLDYGSIELCSVMPPQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0667 294 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Lele03g0667 294 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Lele03g0667 294 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Lele03g0667 294 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Lele03g0667 294 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Lele03g0667 294 CDD AP2 105 165 IPR001471 GO:0003700|GO:0006355
Lele03g0667 294 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 86 239 - -
Lele03g0667 294 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Lele03g0667 294 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Lele03g0667 294 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0667 Lele-ChrLele03 3909898 3912621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0667 100 294 AP2-EREBP Transcription Factor Family AT5G25190 65.128 1.30e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele03g0667 AP2 2.2e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0663 25 4168417 4169067 Lele03g0667 03 3909898 3912621 CCT
Lele26g0672 26 4273050 4273694 Lele03g0667 03 3909898 3912621 CCT
Lele27g1424 27 20507647 20508298 Lele03g0667 03 3909898 3912621 CCT
Lele03g0667 03 3909898 3912621 Lele03g0667 03 3909898 3912621 ECH
Lele01g0671 01 3900297 3902967 Lele03g0667 03 3909898 3912621 hybridization