Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0662 ATGGCCTCCCATAATCAACACCACCTATCACCCCACCATTTCTCCGACTCCGATCAACCCAATTGCCTCCCCCACCCCCTCCTCCATTCCAACTATTCCCACCACCCTCACACTCACAACAATTCCTCCGACGTTTCCAACAATATCGACGCCAACAATTTCCTCCACCTCTACGCTACGGCCCCCTCTGACTCTACCGCAGCTGCTTCCCTCCGCCCTGACCACACTCACGTCATTGACGACGTCGCTGCCGGGAACTCCCTCATCGACGGCGCTGCCTTGTCCCACGAGTCCGCCGATTTGAATATGGCTTCGGGCGACAACCCCAATGCCAAGAGCGAGGTGGTTGTGGAGGACGGGGAGGCGAGGTTGGCCAAGTGGGAGAATGCGAGGTCCAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTGCTGTCCGCACACGTGGCGTGTTTGCGGATCGCCACGCCTGTTGACCAGTTGCCCAGGATTGACGCTCAACTAGCGCAGTCAGAGAATGTGGTGGCCAAATACTCAGCTTTGGGACATGGAGCACACAGCTTGGTTGGGGATGAGAAGGGACTCGATCAATTCATGTCGCATTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTCATGGCATGTTGGGAGATAGAACAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCTACCATGTCTGATGACGAAGAAGACCACATAAACAGTGATGTAAATCTTTTCGATGGTACTTTGGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTCATGGAGCGAGTTCGGCAAGAGTTGAGACATGAACTTAAACAGGGCTATAAGGATAAAATTGTGGACATAAGAGAAGAAATTTTGCGCAAGAGACGAGCTGGTAAACTTCCCGGTGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTTCAAGTGGCCTTACCCTACTGAGGAAGATAAGGCAAAGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAACAATTGGTTCATTAATCAAAGGAAGAGGAACTGGCACAGCAATGCTTTAACTTCTACCGTCTCGAAGAGCAAGAGGAAAAGGGGATAA 1191 0.5071 MASHNQHHLSPHHFSDSDQPNCLPHPLLHSNYSHHPHTHNNSSDVSNNIDANNFLHLYATAPSDSTAAASLRPDHTHVIDDVAAGNSLIDGAALSHESADLNMASGDNPNAKSEVVVEDGEARLAKWENARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVAKYSALGHGAHSLVGDEKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDHINSDVNLFDGTLDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQAHFKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNALTSTVSKSKRKRG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0662 396 Pfam ELK domain 298 319 IPR005539 GO:0003677
Lele03g0662 396 CDD homeodomain 321 382 IPR001356 GO:0003677
Lele03g0662 396 ProSiteProfiles ELK domain profile. 298 318 IPR005539 GO:0003677
Lele03g0662 396 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 380 - -
Lele03g0662 396 SMART HOX_1 320 385 IPR001356 GO:0003677
Lele03g0662 396 SMART KNOX1_2 130 174 IPR005540 GO:0003677|GO:0005634
Lele03g0662 396 SMART KNOX2_2 186 241 IPR005541 GO:0003677|GO:0005634
Lele03g0662 396 Pfam KNOX1 domain 133 173 IPR005540 GO:0003677|GO:0005634
Lele03g0662 396 SUPERFAMILY Homeodomain-like 320 383 IPR009057 -
Lele03g0662 396 MobiDBLite consensus disorder prediction 1 46 - -
Lele03g0662 396 Pfam Homeobox KN domain 338 377 IPR008422 GO:0003677|GO:0006355
Lele03g0662 396 ProSiteProfiles 'Homeobox' domain profile. 318 381 IPR001356 GO:0003677
Lele03g0662 396 Pfam KNOX2 domain 190 240 IPR005541 GO:0003677|GO:0005634
Lele03g0662 396 Gene3D - 319 380 - -
Lele03g0662 396 FunFam homeobox protein knotted-1-like 3 isoform X1 319 380 - -
Lele03g0662 396 SMART ELK_2 298 319 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0662 Lele-ChrLele03 3877399 3880219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0662 79 395 Homeobox Transcription Factor Family AT5G25220 76.415 4.72e-177 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele03g0662 KNOX2 2.1e-19 No_clan