Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0612 ATGATTTTCTTGGAGCCACTGTCTTTGGATTTTCGATTGGGGCCAGTTAAGAGGGATTTGAAGGCTTCTGCCCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTTGCTATTGATGCCCCGGGAGGATTTCTGTTCGAGTGGTGGTCAGTTTTCTGGGATATATTTATCTCCAGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCTTATATTGAGCAGCAGCTGTCACAACCACAGCAACAGCAGCAGAGAGGGGATGGGGCTCATCTCTTAAATGGCAGTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAACCTCCTCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGCAAAAATTTGGTGACAACATGGGCCAACTCCTGGACCCAAATCATGCCTCAATAATGAAGTCAGCTGCAGCTTCTGGCCAGTCGTCAGGTGATCTCTTAGTGTGTTTTGGGGATGGGTTAGTGGAGTGGTTGTTCCCTGACATGTTGCTTGGAATCCAGGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCCTGAAGGATCTTTAATGGGAATTCCTGGATCAAATCAGGGCAGCAACAACTTGACTCTGAAAGGATGGCCACTCACAGACTTGGAACAACTGCGCTCTGGTATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAATTACAAATGTTGACACCTCACCATCAACAGCAGCTTATGCTTGCCCAGCAAAATTTGTCATCCCCATCTGCCAGTGATGAGAATAGAAAACTGAGAATGCTACTGAGTCAGAGGAATATGGGCCTAAATAAGGACGGCCTTCCAAATCCTGTTGATGTGGTTCCAAATGTTGGATCACCTCTTCAAGCTGATGGCCCTCTTTTGCCTCGTGGGGATACAGATACGCTAATGAAGCTAGATAAAATGGGGGGTGGTGGCAGTGTCACTATGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAATCCAGACTGGGAGAAATAGAAAGCAGGCTGTATCTTCTTCAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGTTCTGCACCCTCAACTCCCTCGACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTCAGCACTGATGGTACTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGACAATGTTGAGTCTTTTTTGTCACATGATGATAAGCAAAGGTGCAGCTTCACATTTTCTGAAGTAAATTCTGTACAATCAAGCACAAGCAAAGTTGTTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAGAAGCCTGGATATACAATTCGCACATTTACTGGACATTCTGGATCTGTTATGTCAGATTTTCACCCGAATAAGGATGGTGATGGTGAGATACGATATTGGAGTATAACCAATGGTAGCTGTGCTAGGATCGCGAAGCTGCAGAAAATGTTGTCTCTACTTGATGTGGAGACACAACAATGCAGATATTCATTACAGGGACATACAAAGCCAATACATTCTGTCTGCTGGGACCCTACAGGGGAATTACTGGCATATGTGAGTGAGGACTTCGTCAGGGTTTGGACTCTTGGGACAGGGAGTGAAGGAAAATGTGTTCATGAGCTAAGCTGTAACCGCAATAAGTTCCAGTCCTGTGTTTTCCATCCGACTTATTCCTCCTTGCTGGTCATTGGCTGTTACCAGGCAAGTTACATTCTGTTTTTGGTCTTTTCGTTTTGGTGCTATGCTTTCTTGACATCCATGAGTTTGGGTATCTATGTTCATGTAATTGAAGTGCCTTGTCTCATTGCTGCCTTGGCAGTGTCTCCATTGACTGGTTTGGTTGCTTCAGCTAGTCACAAGTTCGTCAAGCTATGGAAATAA 2094 0.4451 MIFLEPLSLDFRLGPVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEVAASYIEQQLSQPQQQQQRGDGAHLLNGSTNGLVGNPSTANAMATKMYEERLKPPLQRDSLDDAAMKQKFGDNMGQLLDPNHASIMKSAAASGQSSGDLLVCFGDGLVEWLFPDMLLGIQDIKSEINPVLNSRAAGPEGSLMGIPGSNQGSNNLTLKGWPLTDLEQLRSGILHQQKPFIQAPQPLHQLQMLTPHHQQQLMLAQQNLSSPSASDENRKLRMLLSQRNMGLNKDGLPNPVDVVPNVGSPLQADGPLLPRGDTDTLMKLDKMGGGGSVTMDGSMSNSFRGNDQVSKIQTGRNRKQAVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDKQRCSFTFSEVNSVQSSTSKVVCCHFSSDGKLLASGGHDKKPGYTIRTFTGHSGSVMSDFHPNKDGDGEIRYWSITNGSCARIAKLQKMLSLLDVETQQCRYSLQGHTKPIHSVCWDPTGELLAYVSEDFVRVWTLGTGSEGKCVHELSCNRNKFQSCVFHPTYSSLLVIGCYQASYILFLVFSFWCYAFLTSMSLGIYVHVIEVPCLIAALAVSPLTGLVASASHKFVKLWK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0612 697 Pfam WD domain, G-beta repeat 481 504 IPR001680 GO:0005515
Lele03g0612 697 Pfam WD domain, G-beta repeat 563 598 IPR001680 GO:0005515
Lele03g0612 697 MobiDBLite consensus disorder prediction 77 105 - -
Lele03g0612 697 MobiDBLite consensus disorder prediction 296 422 - -
Lele03g0612 697 Gene3D - 550 697 IPR015943 GO:0005515
Lele03g0612 697 SMART WD40_4 605 645 IPR001680 GO:0005515
Lele03g0612 697 SMART WD40_4 471 514 IPR001680 GO:0005515
Lele03g0612 697 SMART WD40_4 561 599 IPR001680 GO:0005515
Lele03g0612 697 SMART WD40_4 660 697 IPR001680 GO:0005515
Lele03g0612 697 PANTHER TRANSCRIPTION ACTIVATOR MSS11 76 334 - -
Lele03g0612 697 SUPERFAMILY WD40 repeat-like 477 696 IPR036322 GO:0005515
Lele03g0612 697 Gene3D - 415 549 IPR015943 GO:0005515
Lele03g0612 697 MobiDBLite consensus disorder prediction 344 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0612 Lele-ChrLele03 3598226 3605464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0612 503 649 Miscellaneous Gene Families AT5G08390 28.859 6.14e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele03g0612 WD40 0.001 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1487 27 20909923 20912034 Lele03g0612 03 3598226 3605464 CCT
Lele28g0596 28 3814586 3816741 Lele03g0612 03 3598226 3605464 CCT
Lele25g0594 25 3774568 3781852 Lele03g0612 03 3598226 3605464 CCT
Lele26g0608 26 3879238 3889134 Lele03g0612 03 3598226 3605464 CCT
Lele01g0611 01 3585976 3589511 Lele03g0612 03 3598226 3605464 hybridization
Lele02g0599 02 3588250 3597596 Lele03g0612 03 3598226 3605464 hybridization