Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0610 ATGGCTCAGCATAACAATGGCAACAACAGTGCGAGCCAACAGTTAGTGAAGCCTGTCTTCCATGATTTTCTGGGCTCGAAGCCCAATGATTCCCTTATCGTTTTGGCCCCCAAAACCGCCAACATGAGGCTCTCTGAGGCCTCCCCGTCCTCCGCATCGGTGTCCGTTGCCGCCTCTTCTGGCGGTGGGCGTGGTCCCTTCTCAACCACATCCGACATCGGCTCTGAAAGACAGGTAGGAAATCATCTCGAGGGAGTTCCATTTTATGGACCTAGGAGTGATTTTTCTGACACTGGGCTAAGCAACAGACTAATTGGAAACAAGAGAAGTACTTCTGAGTCCGGTTTCATGGGATCCTCCAGAGATGCCTTCCAAATGGTCCCTGACTCCATTCAAAACTCACATTTGATGAAAATGTTCCGGAGTACAGCGGGAGGAGAGCATCGTAGAAGGTCTAATGATGATGAAGTTTTTCTTGGCATGCAGTCACTGAAGCCAACTTCGGCTTCTCAGATATTTCAGCCTCTTACTGGAACTAAGTTTGATGCCAATAGATGGGAACGGTCTGTTGTTATGAATGTTGGCCCTTCGATGCAGCATCCACCACGTGGGGCTCAATTAACACCTTTTGTACACCAGATGGCTTCAAACAAGGTCAGGGAGACCAATATTGGTCCTTCATTTATCTCTCAGTCAGCTGCTGATGAGGGATCTAGAACTGGAATGAAAGGCGCTGGAATTTTGAGCTCTATAAACATCACAACTGCTGCCACTGAGAAAACTCCATCTGCAGTGGTGCTTGGTGGAGGCAGGCCAAAGCCTGTGATGAATGTAATAGATTTAGAATCATACACTCCTTCGAGCCAACATGAGTCGAGATCTGCCAGCTGCCAGATGACCATATTCTATGGAGGTCAAGCTCACGTGTTTGATAGTGTCCACCCGAATAAGGCAGATGTTATAATGAGCTTAGCAGGGTCAAATGGAGGAAGTTGGTCCACAAGCACTTGCTCGGCGAAGCCTCCATTGAAGCCGCTGCTTCATGATTCTGCAGAAACTCAAACTGGGAAGCTTCACGTCATTCCCTCTGACGATCACATCACGACTCCACCACCACCACCGCCATCAGGGCGACTTCAAGCAATTGTTGCTGCTAAAGAACATGGTAGAAGAAACCCTGTTGAAGTAGCCGAGCTAGATGCCATTTCTCAAGAGAAGAGAGCCCAATGA 1230 0.4846 MAQHNNGNNSASQQLVKPVFHDFLGSKPNDSLIVLAPKTANMRLSEASPSSASVSVAASSGGGRGPFSTTSDIGSERQVGNHLEGVPFYGPRSDFSDTGLSNRLIGNKRSTSESGFMGSSRDAFQMVPDSIQNSHLMKMFRSTAGGEHRRRSNDDEVFLGMQSLKPTSASQIFQPLTGTKFDANRWERSVVMNVGPSMQHPPRGAQLTPFVHQMASNKVRETNIGPSFISQSAADEGSRTGMKGAGILSSINITTAATEKTPSAVVLGGGRPKPVMNVIDLESYTPSSQHESRSASCQMTIFYGGQAHVFDSVHPNKADVIMSLAGSNGGSWSTSTCSAKPPLKPLLHDSAETQTGKLHVIPSDDHITTPPPPPPSGRLQAIVAAKEHGRRNPVEVAELDAISQEKRAQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0610 409 SMART tify_2 292 327 IPR010399 -
Lele03g0610 409 MobiDBLite consensus disorder prediction 388 409 - -
Lele03g0610 409 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 170 359 IPR040390 -
Lele03g0610 409 MobiDBLite consensus disorder prediction 45 75 - -
Lele03g0610 409 ProSiteProfiles Tify domain profile. 292 327 IPR010399 -
Lele03g0610 409 Pfam tify domain 295 326 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0610 Lele-ChrLele03 3587594 3591775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0610 1 325 Tify Gene Family AT4G32570 38.596 2.84e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele03g0610 tify 3.1e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0589 25 3749351 3752820 Lele03g0610 03 3587594 3591775 CCT
Lele26g0604 26 3850684 3854213 Lele03g0610 03 3587594 3591775 CCT
Lele01g0607 01 3569233 3573245 Lele03g0610 03 3587594 3591775 hybridization
Lele02g0598 02 3580301 3584184 Lele03g0610 03 3587594 3591775 hybridization