Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0606 ATGGCGATAAAGCCCACCGTAATCCACGCTCCTTGCATTACAGTGACGTGTGTGAAGCGGGAACCGGAAGAGGCAAAGATCAGGGAGGGCAAAAAGGATCGTCTCTCTCTCCACGGCGCTGCTCCATCTTCTCCGTCGCTGAGCCCAGCCGCAGCTCCTCTCCGAACGGGGATACTTAACGTTCCCTCTCCAAAACTATATCTTGAAGGTTTATACGACACTTGCGCATTGTTGATGGAGCATTCTGAGCCCTTGAACGGCACTCAGTTCATTGTTGACATAGCGGGGAGTAGTGAAGCTTCCACGTCTACCTCCCCACATGATAGACATTTGAATGGCGGAGGTACATCACAACATGAAGACAGACCTAGTAGTGCAAGATTACCTGTTTCTGTTGTATCTAATGGTACAAATTCTAGGAATTCTTCAGTTGTAAGACGAGGGGATACCCGTCGGCACAGGAGTCCATTGAATTCTGGGTTATGGATATCTATTGAGCTAGTCCTCACAGTAAGCCAGATTATTGCATCTATTATTGTTTTGTCTCTGTCAAGGCATGAGCATCCACGCACTCCTTTGTTTGCATGGATTGTTGGTTATGCATCTGGATGCGTTGCTACTATCCCCCTGCTTGGTTGGAGGTATTATCATCATAACCAGAGTAGAGAGCAAAATTCATCTCAACCACGTCAAGCTTCCCCTCGAGTTAATGTTTCTTCAAGGACTCTTCTTTCTGTTTCAAGAACTAATGGGGGAGAAGACAATCAGGCTGTTGTTTCATCCTCTAGAAGCAGTCAAGTTCCAGTAATGATGAATCCAAGACTGAAGTCTCTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGCAATGTGTGGATCTTTGGGGGAAACTCATCTGCTAATGATGCTCCTAATATGTATAGGTTATGTATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCCTTCATTCTATGTGCAACAATCTGCTGTTGCCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAAACAAGAGGGGCAACCCCTGTATCTATTAATGCACTGCCAACGTACAAGTTCAAGGTGAAGAAACGTAAAAACAGTGATGAAAGCAACTCAAATGTTTTTGAAGGTGGAATTGTGGCCGCTGGAACTGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAGTTGGCATGTTCTCATCTTTTTCACAAAGACTGTGTAGACAAGTGGCTGAAGATTAATGCATTATGCCCTCTTTGCAAAAGTGAGGTTGGTGGGAACCTAATAGGACCAGTCTCTGGTGAAGGTTCCAACCAACAAAGGGGTGAGAGTAGAGTTGGAGTTAGCCCAATCAATAGCATAGTATAG 1467 0.4472 MAIKPTVIHAPCITVTCVKREPEEAKIREGKKDRLSLHGAAPSSPSLSPAAAPLRTGILNVPSPKLYLEGLYDTCALLMEHSEPLNGTQFIVDIAGSSEASTSTSPHDRHLNGGGTSQHEDRPSSARLPVSVVSNGTNSRNSSVVRRGDTRRHRSPLNSGLWISIELVLTVSQIIASIIVLSLSRHEHPRTPLFAWIVGYASGCVATIPLLGWRYYHHNQSREQNSSQPRQASPRVNVSSRTLLSVSRTNGGEDNQAVVSSSRSSQVPVMMNPRLKSLVEYFKMALDCFFAVWFVVGNVWIFGGNSSANDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATPVSINALPTYKFKVKKRKNSDESNSNVFEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELACSHLFHKDCVDKWLKINALCPLCKSEVGGNLIGPVSGEGSNQQRGESRVGVSPINSIV 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0606 488 ProSiteProfiles Zinc finger RING-type profile. 413 454 IPR001841 -
Lele03g0606 488 SMART ring_2 413 453 IPR001841 -
Lele03g0606 488 MobiDBLite consensus disorder prediction 28 52 - -
Lele03g0606 488 MobiDBLite consensus disorder prediction 464 488 - -
Lele03g0606 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 459 IPR013083 -
Lele03g0606 488 MobiDBLite consensus disorder prediction 98 144 - -
Lele03g0606 488 Pfam Ring finger domain 413 454 IPR001841 -
Lele03g0606 488 MobiDBLite consensus disorder prediction 98 155 - -
Lele03g0606 488 MobiDBLite consensus disorder prediction 465 488 - -
Lele03g0606 488 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 79 457 - -
Lele03g0606 488 SUPERFAMILY RING/U-box 405 457 - -
Lele03g0606 488 FunFam E3 ubiquitin-protein ligase 396 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0606 Lele-ChrLele03 3563384 3567110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0606 146 458 C3H Transcription Factor Family AT1G80400 59.748 7.95e-141 409