Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0553 ATGATGGGCTCCTTCGAATTGCTTAAGGAGAAGGAATCAAGCAACAAAGAGATGGAAATGGAAAAGTGTAATGGAGGGAAAGATGAAACCCTACCGCCGGGATTTCGATTCCATCCTTCAGATGAAGAACTTATCACTCACTATCTCATCAACAAGATCTCTGATTCTAGCTTTACAGGAAGAGCAATCGCTGATGTGGATCTCAACAAATGCGAGCCTTGGGATCTCCCAGGCAGGGCCCCAAGAGGCGAGAAAACCAACTGGGTCATGCATGAATACCGCATTCACTCTAAATCCAACAAGCAAGATGAATGGGTGGTCTGCCGAGTGTTTCAGAAGAGTGCGAGTGTGGTAAAGAAGTACCCTAATTCGAACCATACAAGAGGACTCTTCAATCCTTATGGCCTGGACTTAGCAGCTGTTAATATGCCACCACCGATGAATATGATGCAGCTTGGAGATCCTGCAACTCATTTCCTTTACGGAAGAAATAATAATAATAATAATAATAATTACATAATGATGAATCATTCAGCTGTACCAAGCAATAATAATGCTTGTCTGAACCTTCCGATGCAATCCCACTTCAACTATCCCGTTACAGCATCAGGAGGGTTCAGTATCTCAGCCCTAAATTTGAATCTGGGAAATACAGTTGCAGGTGGAGCACCCACCTCATCAGAACCCTTTTTGCGACCATTCAGTAACCAACACGATTTGGTTAGCTCTAACAACATAGTGACACCTGTCACTTCTCTCGGAGCCGACAACGTAGGAGGCTGCTATGGTGTGGATATGAGCAACGTCAATCCTCAGACGACTCAGAGTAATAAGTATATGGGCATGGTGGATCAATGTGTTGATCTGGATGCTTACTGGCCTTCCTACTAA 891 0.4411 MMGSFELLKEKESSNKEMEMEKCNGGKDETLPPGFRFHPSDEELITHYLINKISDSSFTGRAIADVDLNKCEPWDLPGRAPRGEKTNWVMHEYRIHSKSNKQDEWVVCRVFQKSASVVKKYPNSNHTRGLFNPYGLDLAAVNMPPPMNMMQLGDPATHFLYGRNNNNNNNNYIMMNHSAVPSNNNACLNLPMQSHFNYPVTASGGFSISALNLNLGNTVAGGAPTSSEPFLRPFSNQHDLVSSNNIVTPVTSLGADNVGGCYGVDMSNVNPQTTQSNKYMGMVDQCVDLDAYWPSY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0553 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 28 78 - -
Lele03g0553 296 SUPERFAMILY NAC domain 29 113 IPR036093 GO:0003677|GO:0006355
Lele03g0553 296 Gene3D NAC domain 40 78 IPR036093 GO:0003677|GO:0006355
Lele03g0553 296 Gene3D NAC domain 79 118 IPR036093 GO:0003677|GO:0006355
Lele03g0553 296 ProSiteProfiles NAC domain profile. 31 203 IPR003441 GO:0003677|GO:0006355
Lele03g0553 296 Pfam No apical meristem (NAM) protein 32 80 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0553 Lele-ChrLele03 3278549 3280487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0553 28 94 NAC Transcription Factor Family AT3G18400 67.164 1.25e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele03g0553 NAM 5.3e-13 No_clan