Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0519 ATGCCTATTCCCCTGTCTGAGGGCCACAGGATGATGGCTTTGAGTTCTGGGTGCAAAGAGGGAAGCAAGATGGGAATGGAGAACGGCAAGTATGTGAGGTACACGCCGGAGCAGGTTGAAGCTCTGGAGAGGCTTTATCACGAATGCCCAAAGCCCAGTTCCATGCGTCGCCAGCAGCTCATCAGAGAATGCCCTATTCTCTCTAATATCGAGCCCAAGCAGATGAAGGTTTGGTTCCAGAACCGAAGATGTAGAGAGAAGCAGCGGAAGGAATCGATACGCCTGCAAGCTGTGAACAGGAAACTGACGGCCATGAATAAACTACTGATGGAGGAAAATGAGAGATTGCAGAAGCAAGTGTCACGGCTGGTTTATGAGAACAGCTTTTTCCGCCAACAGAGACAAAATGCGAGCCTTGCTACGACGGACACAAGCTGTGAATCTGTGGTAACCAGCGGTCAGCACCATCTGACACCTCAGCATCCACCAAGGGATGCCACCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACCTTAACAGAGTTTCTTTCGAAGGCTACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGATTGCCCTGGAGTGGCAGCAAGAGCCTGCGGCCTTGTGGGTCTCGAACCTACAACGGTTGCGGAAATCCTCAAAGATAGGCCCTCGTGGTTTCGTGATTGCCGAGCCTTGGATGTTCTGAATGTGATGCCCACTGGAAATGGGGGAACCATTGAAATGCTTTACATGCAGTTGTATTCGCCCACAACTTTGGCACCTGCTCGTGACTTCTGGTTTCTGCGTTACACATCCGTTTTGGAGAACGGCAGTCTAGTGGTCTGTGAAAGATCGCTTAACAACACCCAGAATGGACCTACAGTACCCCCGGTGCAGCACTTTGTTAGGGCAGATATGCTGCCTAGCGGCTATCTGATTAGACCTTGTGAAGGAGGTGGATCCATTATTCATATTGTTGATCATGTGGATTTAGAGCCCTGGAGTGTTCCTGAAGTGTTGCGCCCGCTTTATGAGTCATCAACGCTGCATGCTCAAAAGACAACAATGTCGGCCTTACGTCATTTGAGGCAGATCTCTCAAGAAGCTTCTCAACCAAATGTCTCAGGATGGGGGAGAAGGCCTGCAGCTCTACGTGCACTTAGTCAGCGATTGAGCAAGGGATTCAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAAAGTGATGGCATTGATGATGTCACCCTTCTGGTGAATTCAACTCCCAACAAGATGGTGGGAGTAAACTTTGTTCAGAGCAATGGATATCCTTATATGAGCAGTTCTGTGCTATGTGCCAAAGCATCAATGCTGTTACAGAATGTCCCTCCAGCAATTCTTCTCAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATCAAAGCTGGTCCCTGTAGCTTGCCCGGAGCCCTGCCAGGAAGTTTTGGCGGTCAGGTTATTCTACCTCTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTCATTAAGCTTGAAAACATGGGTTACTATAGGGATGACATGACTATACCTGAGGATGTTTTCCTCTTGCAACTTTGTAATGGAGCTGATGAGCATGCAAATGGTACCTATGCAGAACTCATTTTTGCTCCTATTGATGCATCTTTCTCTGATGATGCACCTATTTTACCTTCTGGTTTTCGCATCATAGCTCTCAATTCTAACACGGATGCTGCAAGTAAAAATCGTACACTTGATCTTGCTTCTTCTCTTGAAGTTAAAACCACAGCTAACCAAGCGGGCAGTGACAACAATGGGAACACAAAATCTGTGATGACAATGGCATTCCAGTTTGCATTTGGAGTCCACCTTCAGGATAGTGTAGCCGCTATGTCCCGGCAGTATGTCCGTAGTATTATTGCATCTGTTCAAAGGGTTTCATTAGCACTCTCCCCTTTGCATTTTGGTTCTCACAATGGCCTGCATGCTCCACCTGGCCCTCCTGAGGCACAAACACTCGCTCGTTGGATCTGTCAAAGTCATAGATGCTATCTAGGGGTAGAACTGCTAAAATGTGAAGGCAGTGAATCCATTCCCAAATCCCTTTGGCATCACTCAGATGCGATCCTGTGCTGCTCTTTAAAGGCATTACCCACATTCACATTCGCTAATCAAGCTGGCCTTGACATGCTTGAGACAACTTTGGTGGCTCTTCAAGACATCACTCTGGAGAAAATCTTTGACGACAGTGGAAAGAAAACCCTTTTCTCTGAGTTCCCTCATATAATGAAGCAGGGTTTTATGTGCATGCAAGGTGGAATCTGCGTATCTAGCATGGGGAGGCCCGTGTCGTACGAGAGAGCAGTGGCATGGAAAGTGTCGAACGAAGAAGAAATGGCGCAATGCATATGTTTCATGTTCATCAACTGGTCTTTTGTCTGA 2541 0.4786 MPIPLSEGHRMMALSSGCKEGSKMGMENGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQMKVWFQNRRCREKQRKESIRLQAVNRKLTAMNKLLMEENERLQKQVSRLVYENSFFRQQRQNASLATTDTSCESVVTSGQHHLTPQHPPRDATPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHDCPGVAARACGLVGLEPTTVAEILKDRPSWFRDCRALDVLNVMPTGNGGTIEMLYMQLYSPTTLAPARDFWFLRYTSVLENGSLVVCERSLNNTQNGPTVPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLYESSTLHAQKTTMSALRHLRQISQEASQPNVSGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSTPNKMVGVNFVQSNGYPYMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGALPGSFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPEDVFLLQLCNGADEHANGTYAELIFAPIDASFSDDAPILPSGFRIIALNSNTDAASKNRTLDLASSLEVKTTANQAGSDNNGNTKSVMTMAFQFAFGVHLQDSVAAMSRQYVRSIIASVQRVSLALSPLHFGSHNGLHAPPGPPEAQTLARWICQSHRCYLGVELLKCEGSESIPKSLWHHSDAILCCSLKALPTFTFANQAGLDMLETTLVALQDITLEKIFDDSGKKTLFSEFPHIMKQGFMCMQGGICVSSMGRPVSYERAVAWKVSNEEEMAQCICFMFINWSFV 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0519 846 Gene3D - 22 94 - -
Lele03g0519 846 CDD START_ArGLABRA2_like 168 383 - -
Lele03g0519 846 ProSiteProfiles START domain profile. 164 378 IPR002913 GO:0008289
Lele03g0519 846 CDD bZIP 82 121 - -
Lele03g0519 846 SMART HOX_1 27 93 IPR001356 GO:0003677
Lele03g0519 846 SMART START_1 173 383 IPR002913 GO:0008289
Lele03g0519 846 Pfam START domain 174 382 IPR002913 GO:0008289
Lele03g0519 846 ProSiteProfiles 'Homeobox' domain profile. 25 89 IPR001356 GO:0003677
Lele03g0519 846 CDD homeodomain 30 90 IPR001356 GO:0003677
Lele03g0519 846 FunFam Homeobox-leucine zipper protein REVOLUTA 30 85 - -
Lele03g0519 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 26 846 IPR044830 GO:0003700
Lele03g0519 846 Coils Coil 95 126 - -
Lele03g0519 846 SUPERFAMILY Bet v1-like 173 385 - -
Lele03g0519 846 Pfam MEKHLA domain 705 845 IPR013978 -
Lele03g0519 846 Pfam Homeodomain 30 88 IPR001356 GO:0003677
Lele03g0519 846 Gene3D - 204 390 IPR023393 -
Lele03g0519 846 SUPERFAMILY Homeodomain-like 29 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0519 Lele-ChrLele03 3043125 3048739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0519 26 846 Homeobox Transcription Factor Family AT4G32880 78.287 0.0 1348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele03g0519 START 3.1e-52 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0519 03 3043125 3048739 Lele03g0519 03 3043125 3048739 ECH
Lele01g0511 01 3022026 3027299 Lele03g0519 03 3043125 3048739 hybridization
Lele02g0497 02 2983208 2989436 Lele03g0519 03 3043125 3048739 hybridization