Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0485 ATGGAACTCAGTGAACGTGATCATTTTTTGGAAGAACTACTGGCTGTGAGAAGGGAAACATGGGACACCATCCCATCAGAATCAAACCAACTCTTCTCTAATGGCTGGGGTTTTGATTGTTTTGATCAAAACTCTCTGCCTTTTCTTCCAAACTCTTCATGTCAAGAAATTCCTCAGAGTTACTACAACAACCACAACAATTACGCCTTCAATGAAATCTACAGTTCCTTACTTGATGAATTCTCTGCTCCCCAGAATGTTGATTCATCTTCTTCATCCTATAACGTTCTCGATACTCCAGTTCTGGGTCAAGAAGATTACCCATTGTCCATGATGGAAGATTTGGAGGATCCGGGTTTGCTTGGGGATGAACTTCAGAGCTTGGACCTGCAAACCACATGCAAGGTAGAGCCAAGCCAATCCCCAGAAATGGCAATTGTCAATATGGGTGATGCGTCTCTGCAAAGAAAGAATCGAGCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGGAGGAGAAAGAGGTTAAATGATCGCCTCTCAATGCTGAGATCAATTGTCCCCAAGATAAGCAAGATGGACAGAACATCTATCCTTGGAGACACTATAGATTACATGAAAGAACTCCTGGAGAAGATTAACAAATTGCAACAACAATTAGAGATGGATTCAAACATGGGAGGCATTTTGAAGGATACAGAGCAAAATGAAATCTTGGTGAGAAATACACCCAAGTTTGAAGTGAAGAGGAAGAATGAGGATACGCAGATTGAAATTTACTGTACAGGAAAGCCAGGATTGTTGCATTCTACACTGAACACTCTGGAAGCATTTGGTCTTGAGATTGAACAATGTGTAATAAGCTGTTTCAACGATTTCACTGTGCAGGCTTCTTGCTCAGAGGAAATGGAGCAGAGGACAGTACTGAGTTGTGAAGATATAAAGCAGGCGTTATTTAGAAGCGCAGGGTATGGAGGAAGATTTATTTTGATTGTACTATCAAATGACTTCTTCTTATCTGGCTTTCTCAAGCTTTCCCCCTCCACTCCATCTTATCGTGTAAAAGATAAAGCAGAGCACTCAGTTGAAATCCACATTCCAGAAGCTGACAAGAGAAGCAACGCGCGTAGAGATGACAACAATGCAAGGCTTACTGAGTCACACATGGGGATAGAGGACACGGCAAGTCCAGTTTCCGTTGGGTTCCCTCTGAGTTTGGGCCTTCTCTTCGCCTTGTTGTTGCTGCTCTGTGGAGTTCTCTGTTGCTGTTTGCGGTGGGACAGGTTCCGAGCTTTGCTTCCATGTTCTGAGTTTCTCAACTCTCTTCTTGGATCAGATCATCCGGCTTATTATTATCCTCCCCAGAAGCCAGAGCTTCCCGTTGTGGTGACGAAGCAGGAGGAGGTCGAGAGCTTGCCGGTGTTGATGCCAGGAGATGAGGTCCCAAAATTCATAGCCTTGGCCTGTCCGTGTCAGCCTCCCAAAGAAGGAAAGATCACAATTCAAGTCGACGAGGCCACCTGA 1539 0.4444 MELSERDHFLEELLAVRRETWDTIPSESNQLFSNGWGFDCFDQNSLPFLPNSSCQEIPQSYYNNHNNYAFNEIYSSLLDEFSAPQNVDSSSSSYNVLDTPVLGQEDYPLSMMEDLEDPGLLGDELQSLDLQTTCKVEPSQSPEMAIVNMGDASLQRKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQQLEMDSNMGGILKDTEQNEILVRNTPKFEVKRKNEDTQIEIYCTGKPGLLHSTLNTLEAFGLEIEQCVISCFNDFTVQASCSEEMEQRTVLSCEDIKQALFRSAGYGGRFILIVLSNDFFLSGFLKLSPSTPSYRVKDKAEHSVEIHIPEADKRSNARRDDNNARLTESHMGIEDTASPVSVGFPLSLGLLFALLLLLCGVLCCCLRWDRFRALLPCSEFLNSLLGSDHPAYYYPPQKPELPVVVTKQEEVESLPVLMPGDEVPKFIALACPCQPPKEGKITIQVDEAT 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0485 512 SMART finulus 171 220 IPR011598 GO:0046983
Lele03g0485 512 Coils Coil 204 231 - -
Lele03g0485 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Lele03g0485 512 CDD ACT_UUR-ACR-like 260 323 - -
Lele03g0485 512 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 329 - -
Lele03g0485 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 227 IPR036638 GO:0046983
Lele03g0485 512 Pfam Helix-loop-helix DNA-binding domain 171 214 IPR011598 GO:0046983
Lele03g0485 512 Gene3D - 173 247 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0485 Lele-ChrLele03 2815042 2819749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0485 131 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.024 5.42e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele03g0485 HLH 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0485 03 2815042 2819749 Lele03g0485 03 2815042 2819749 ECH
Lele01g0476 01 2808660 2809955 Lele03g0485 03 2815042 2819749 hybridization
Lele02g0461 02 2771342 2772634 Lele03g0485 03 2815042 2819749 hybridization