Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0477 ATGGTGCATGGCTGGATTTGCACGGAGCCGGCGGTTGGATTCTGGCTAATAACGCCCAGCAACGAATTCCGATCCGGTGGACCCCTCAAACAGAACCTAACTTCTCATGTGGTACCCACCACTCTTGCTATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTAAAGTGGGACGAACGTGGCAATGTCAATGGTAGGCTACTCGTCCGAGACAGATATATCAGAGATGACGATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTTCACCAGGAGACGCTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACTATGACGGATATTTCTCCATCAGCAATATACGACCTGGTGACTATAATCTCTACGCATGGGTCCCTGGTTTTATTGGTGATTATAGATATGATGTGGTTATGAACATAACTCCAGGTTGTGACATAGTCGTAGGTGATCTTGTATATGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTACAGCTGCTGAGTTTTATGTTCCTGATCCCAATCCCAAATATGTCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCATTATGGGTTATGGGAGAGATATGCAGAGTTGTACCCTGACAAAGACTTGATTTACACAGTTGGTGTTAGCGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACATGGCAAATCAAGTTCAAACTGGACACAGTGAACAAGAGAAGTGCATATAAACTGCGCATAGCTCTGGCATCAGCAACGTTTTCTGAATTACAGGGAGGGATAACTCCATTGCTAGGCATGGCATTCATGGGCTCTATTGGCTTTTCACTGTCGACATATGGGGTCCTCGACTGGTTGAAGGAGATAATACCATCTTCTTGA 978 0.4438 MVHGWICTEPAVGFWLITPSNEFRSGGPLKQNLTSHVVPTTLAMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIRDDDISAKGAYVGLASPGDAGSWQRECKNYQFWAKADYDGYFSISNIRPGDYNLYAWVPGFIGDYRYDVVMNITPGCDIVVGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYVNKLYVNHPDKFRHYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDTVNKRSAYKLRIALASATFSELQGGITPLLGMAFMGSIGFSLSTYGVLDWLKEIIPSS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0477 325 Gene3D - 65 155 - -
Lele03g0477 325 CDD RGL4_M 66 165 IPR029413 -
Lele03g0477 325 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 45 - -
Lele03g0477 325 FunFam Rhamnogalacturonate lyase B 63 162 - -
Lele03g0477 325 Pfam Polysaccharide lyase family 4, domain III 175 289 IPR029411 -
Lele03g0477 325 SUPERFAMILY Starch-binding domain-like 85 151 IPR013784 GO:0030246
Lele03g0477 325 Pfam Polysaccharide lyase family 4, domain II 89 160 IPR029413 -
Lele03g0477 325 Gene3D - 173 293 - -
Lele03g0477 325 SUPERFAMILY Galactose-binding domain-like 172 287 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0477 Lele-ChrLele03 2745926 2748867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0477 2 318 Polysaccharide Lyase AT1G09890 58.201 1.11e-151 438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0465 01 2733622 2737818 Lele03g0477 03 2745926 2748867 hybridization