Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0476 ATGATGACGATAATCCTCACCAACCGTTTTCTGTTCTTCACGCTTCTGCTGGTTTTGGTTCAGAGCTATGTTCCTTATCCAGGATTGCGACTGGAAATTCAAGATAATCATATTGTGATGGATAATGGCATAGTCCAAGTCACCTTATCAAATCCTGGAGGATCAGTCACCGGAATCCAATACAATGGAATTGACAATTTGCTTGAAGTTCAAAACAAGGAATTTGACAGAGGTTACTGGGATGTTGTATGGGGCGAGGCTGGTAAAAAAGGAACAAAGGGTACATTGGATAGGTTGGAAGCAACAAATTTTACAGTAATTGTTGAAAATGAAGAACAGTTAGAGTTGTCATTCACCAGAAAGTGGCTGCCTTCCCTTGAGGGTAAGATTCCGCCCCTCAATATCGATAAAAGATTCATAATGCTTCGTGGTTCATCGGGCTTCTACACCTATGCCATATACGAGCGTTTGAAGGGATGGCCTGGCTTCAATCTTGACAATACTCGGATTGCATTCAAGCTTCGGAAAGACAAGTTCCATTACATGGTTGTAGCAGACAGTAGGCAAAGATTCATGCCTCTGCCTGATGACCGCTTAGAAGGAAGAGGGCAAGTTCTGGCCTACCCTGAGGCTGTTCTCCTTGTCAATCCTGTTGAGCCTGAATTCAAATGGGAGGTGGATGACAAGTATCAGTACTCATGCGAGAGTCGCAACAACAGAGTTCATGGCTGGATATGCATGGATCTATCTATTGGGTTCTGGCAAATTACCCCAAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACATTACTTCTCACGTGGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCGGGAGCAGATCTAGTAATGAAATTTGGGCCTGAAGAAGAGTGGAGGAAAGTGTATGGGCCCATTTTCATATACCTTAATTCTTTGTCTGACGGAGAAAGCCCGGTCATGCTATGGGAAGACGCTAAACAGCAGATGGTCAATGAAATTGAAAGCTGGCCCTATGCATTTCCAGCTTCACAAGACTTCCCCTCATCTGACCAACGAGGCAAGGTTAAAGGGAGATTACTGGTCCGAGACAAGTTTATCACGGATGGGTGCTTCCCAGCGAGTGGGGCCGATGTGGGATTAGCTGCCACAGGAGATGCCGGATCTTGGCAGAGAGAATACAAGGGTTATCAATTTTGGACCCTCACTGATGATAAAGGCTACTTCACAATCACTGACATACGTGCCGGGCAATATAATCTTTACTCCTGGGTCACTGGCTTTATCGGTGATTATCGATATGACAATGTCATTAACGTAACCTCAGGTTGTGAAGATGATGTGGGAGAACTTGTTTATGAGCCTCCAAGAGATGGCCCTACATTGTGGGAAATAGGCATTCCTGATCGTTCTGCAGCTGAATTCTTTATTCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAATCATCCAGATAGGTATAGGCAATATGGATTGTGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACCATAGGAATCAGTGACTACAAAAAAGATTGGTTTTTTGCTCAGGTTAATAGGAAGAAAGATAACAACACATACCAAGGAACCACATGGCGAATTAATTTCAAACTTGATAAAGTAAACACCAACGGAACCTACAAATTGCGATTGGCTCTGGCATCTGCGCACGCTGCTGAGCTGCAAATTCGGGTAAATAACTCAGAAGCAAACCCAGCTTTGTTCTCAAGTGGAGAGATTGGAAAGGAGAACACAATAGCTAGACATGGAATTCATGGGTTATATTGGCTTTTCAACGTTGATGTACAAGGCACTCTACTTGTGCAGGGCAACAATGCCTTTTTTCTAAAGCAAACAAGAAACACAAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGCCCCTCTTCTGTAACTACTAACGATCGCAATATATAA 2004 0.4346 MMTIILTNRFLFFTLLLVLVQSYVPYPGLRLEIQDNHIVMDNGIVQVTLSNPGGSVTGIQYNGIDNLLEVQNKEFDRGYWDVVWGEAGKKGTKGTLDRLEATNFTVIVENEEQLELSFTRKWLPSLEGKIPPLNIDKRFIMLRGSSGFYTYAIYERLKGWPGFNLDNTRIAFKLRKDKFHYMVVADSRQRFMPLPDDRLEGRGQVLAYPEAVLLVNPVEPEFKWEVDDKYQYSCESRNNRVHGWICMDLSIGFWQITPSYEFRSAGPLKQYITSHVGPTTLSVFHSTHYSGADLVMKFGPEEEWRKVYGPIFIYLNSLSDGESPVMLWEDAKQQMVNEIESWPYAFPASQDFPSSDQRGKVKGRLLVRDKFITDGCFPASGADVGLAATGDAGSWQREYKGYQFWTLTDDKGYFTITDIRAGQYNLYSWVTGFIGDYRYDNVINVTSGCEDDVGELVYEPPRDGPTLWEIGIPDRSAAEFFIPDPNPKYINRLYVNHPDRYRQYGLWERYAELYPNEDLVYTIGISDYKKDWFFAQVNRKKDNNTYQGTTWRINFKLDKVNTNGTYKLRLALASAHAAELQIRVNNSEANPALFSSGEIGKENTIARHGIHGLYWLFNVDVQGTLLVQGNNAFFLKQTRNTSPFQGILYDYIRLEGPSSVTTNDRNI 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0476 667 Gene3D - 354 452 - -
Lele03g0476 667 CDD RGL4_N 29 317 - -
Lele03g0476 667 Pfam Polysaccharide lyase family 4, domain II 380 451 IPR029413 -
Lele03g0476 667 CDD RGL4_C 468 655 - -
Lele03g0476 667 FunFam Rhamnogalacturonate lyase B 354 453 - -
Lele03g0476 667 Pfam Polysaccharide lyase family 4, domain III 466 654 IPR029411 -
Lele03g0476 667 SUPERFAMILY Galactose mutarotase-like 34 317 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele03g0476 667 SUPERFAMILY Starch-binding domain-like 357 448 IPR013784 GO:0030246
Lele03g0476 667 CDD RGL4_M 357 456 IPR029413 -
Lele03g0476 667 Pfam Rhamnogalacturonate lyase family 33 226 IPR010325 -
Lele03g0476 667 Gene3D - 464 655 - -
Lele03g0476 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
Lele03g0476 667 SUPERFAMILY Galactose-binding domain-like 463 655 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0476 Lele-ChrLele03 2739786 2743767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0476 24 658 Polysaccharide Lyase AT1G09890 65.934 0.0 875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0476 03 2739786 2743767 Lele03g0476 03 2739786 2743767 ECH
Lele01g0464 01 2728324 2732397 Lele03g0476 03 2739786 2743767 hybridization
Lele02g0452 02 2688188 2697677 Lele03g0476 03 2739786 2743767 hybridization