Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0475 ATGTCAGCACAAGGAGTTCAGCTGCATATAGGAGACACTCATGTGTCGATGGATAATGGTAATGTGAAAGTGTACTTATCCAAACCTGCAGGATTTGTCACTAGAATACAATACAACGGCGTTGATAATCTGCTTGAAGTTCTTAACCAAAGAGATAACAGAGGATATTTGGACGTCGTTTGGAGTGAAGAAGGCAGCACAGGAACCACTGGGATATTCGAGCGCGTCATCGGAACAAGTTTTAGAGTGGTAGTGGAAAATGAGGAACAGGTGGAGATCTCATTTACGAGAATGTGGGATCCATCTCTGAAGGGAAAGCTTTCGCCATTGATAATAGACAAAAGGTATGTCATGCTTCGTAATTCCCCAGGTTTCTACTCATACGCCATTTTCGAGCACCTAAAAGAGTGGCCTGCTTTCAACATACCCCAGATCAGGATCGTCTTCAAACTGAGAAAAGACAGGTATCATTACATGGCCGTAGCGGATGATAGGCAAAGATTCATGCCACTTCCAGACGATAGATTACCTGGAAGAGGAAAAGAACTAGCACCCCCAGAAGCAGTTTTACTCGTGAATCCTATAGAGCCAGAGTTCAAGGGGGAGGTTGATGACAAGTATCAATATTCGAGTGACAACAAAGATCTGAAGGTGCATGGGTGGATAAGCTCCGGAAAAGAAACTGAAGCTCCAATGGGGTTCTGGGTAATTATACCTAGCAATGAATTCCGATCAGGGGGACCCGTTAAACAGAACCTCACCTCTCATGTGGGCCCCATCAGCCTTGCTATGTTCTTAAGTGCTCATTATGCTGGCGAGGATCTAGTTCTAAAACTCAAACCGAATGAACCTTGGAAGAAAGTATTCGGACCAATCTTTGTGTATCTGAACACTTTGTCGGATGATCAAGACACACTATGGCTCTGGGAGGATGCCAAAGATCAGATGACGAAGAAAGTTCAAAGTTGGCCTTATGATTTTCCAGCTTCAGAGGATTATCAGAAGTCTGACCAACGAGGCAGTGTTTGTGGCACACTACGAGTCCGAGACAGGTGTCAAAGTAACGATTATATATTGGCAAGAGGGGCATATGTAGGACTGGCCCCACCTGGAGAAGCCGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGACAAGAACAAGCGAGGAAGGCTACTTCTCCATTAACAACGTACGTAGTGGGGATTATAATATCTATGCATGGGTTCCTGGTTCAATCGGAGAATACTGGAACAATGTTGTCCTCACCATCACCCCAGGTTGTGAAATAAATGTTGGAGACATTGTTTATGAACCCCCAAGAGATGGTCCAACAATATGGGAGATAGGCATTCCCGATCGCACTGCTGCTGAATTCTATGTTCCTGATCCGAATCCCATGTACATAAACAAGCTTTATGCCAACCATCCAGATAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAACTATATCCAAAGGAAGATTTGGTTTATACAGTTGGTGTTAGTGACTATGGGAAAGATTGGTTCTTTGCACAAGTCACCAGGAAGAAAGATGATGGAACTTACCAAGGAACTACATGGCAAATCAAGTTCAAGCTTGATAACGTGGTGGGAGGCGGGACGTATAAGTTAAGATTGGCACTTGCAACTGCACATGCAGCCGAATTACAGGTTAGAGTGAATGATCCGAAGCAAGAACCTCCTCTGTTCACGAGTGGCTTGATTGGAAAGGACAACACGATAGCTAGGCATGGAATCCATGGACTCTACAGGCTATACAGTGTTGACGTATCGGGTCGGGTTCTGATAGAAGGAGATAATACTTTGTATCTCACGCAGGCTATGGCTACTGGTCCTTTCGAAGGGATCATGTATGACTATGTACGCTTTGAAAGCCCACAATCCTCTGTTTCCTTTTCATAA 1938 0.4443 MSAQGVQLHIGDTHVSMDNGNVKVYLSKPAGFVTRIQYNGVDNLLEVLNQRDNRGYLDVVWSEEGSTGTTGIFERVIGTSFRVVVENEEQVEISFTRMWDPSLKGKLSPLIIDKRYVMLRNSPGFYSYAIFEHLKEWPAFNIPQIRIVFKLRKDRYHYMAVADDRQRFMPLPDDRLPGRGKELAPPEAVLLVNPIEPEFKGEVDDKYQYSSDNKDLKVHGWISSGKETEAPMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLKPNEPWKKVFGPIFVYLNTLSDDQDTLWLWEDAKDQMTKKVQSWPYDFPASEDYQKSDQRGSVCGTLRVRDRCQSNDYILARGAYVGLAPPGEAGSWQRECKGYQFWTRTSEEGYFSINNVRSGDYNIYAWVPGSIGEYWNNVVLTITPGCEINVGDIVYEPPRDGPTIWEIGIPDRTAAEFYVPDPNPMYINKLYANHPDKFRQYGLWERYAELYPKEDLVYTVGVSDYGKDWFFAQVTRKKDDGTYQGTTWQIKFKLDNVVGGGTYKLRLALATAHAAELQVRVNDPKQEPPLFTSGLIGKDNTIARHGIHGLYRLYSVDVSGRVLIEGDNTLYLTQAMATGPFEGIMYDYVRFESPQSSVSFS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0475 645 FunFam Rhamnogalacturonate lyase B 335 434 - -
Lele03g0475 645 Gene3D - 5 277 IPR014718 GO:0030246
Lele03g0475 645 CDD RGL4_N 12 305 - -
Lele03g0475 645 SUPERFAMILY Galactose-binding domain-like 444 636 IPR008979 -
Lele03g0475 645 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Lele03g0475 645 Pfam Polysaccharide lyase family 4, domain III 447 634 IPR029411 -
Lele03g0475 645 CDD RGL4_C 449 636 - -
Lele03g0475 645 Pfam Polysaccharide lyase family 4, domain II 360 433 IPR029413 -
Lele03g0475 645 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 639 - -
Lele03g0475 645 SUPERFAMILY Starch-binding domain-like 361 434 IPR013784 GO:0030246
Lele03g0475 645 Gene3D - 335 432 - -
Lele03g0475 645 Gene3D - 445 635 - -
Lele03g0475 645 CDD RGL4_M 338 437 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0475 Lele-ChrLele03 2735105 2738450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0475 1 638 Polysaccharide Lyase AT1G09890 65.469 0.0 871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0463 01 2722210 2726157 Lele03g0475 03 2735105 2738450 hybridization