Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele03g0469 | ATGGCAGCCGTTAATCCACAACCTCTGCAAGCGCGTCCGTTCGAGAAACAAGTGCGGGGTTCAGTACCGATAGAGGACGACGACGGTGACTATGAGGATGGTGGTGCTAGTGGCCATGCCATGTATGACTTGGAAGAGGGAAATGTTAATTCAGTGGCTGTGCCAAACCATGTAGGAGTTGTTACGACGTCACGAACTAGTGAACTCACTCTTTCTTTCGAGGGTGAAGTTTATGTGTTTCCTGCGGTGACACCGGAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGCACGCGATGTGTCTGCATGTATTCCTTTTGTTGAAGTACCATTCGATGAAAGCAGCAAGGGCATAGGTGATACTCCAAAGCAGTTGAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATTAGGTACTCTGTGAGAAAGGAGGTGGCTCAAAGGATGCATCGCAAGAATGGGCAATTTGCATCCTTCAAAGGAAGTCCTGGTTCATCTATTTTGGATCATTCTACAGAAAGCTTTCATCAGGATGGCGCCTATTCTGGAACTTTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGCCGTGGTCCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTACGTGGGCAAATAAGGGAACACTCAGAGATCTTAATAAGGGAGGAAGAAATCTTCCTGTTGAGCAAAGTGAGCTGGAGACTCCTCTTGAGGTCAAACCTATTATCCTGGAAGGAGAATTGCTTGGCGTCCATGACATGCAAGGAATTTCTGAAGATCCTTCCAATGACATTGCTGAAAGATCTAACAATCATGCTGTAACTGACGAGGAATTGCGGTCTGGTGAACACTTATCAAATTCACTGTCAGCAGGCTTTGTGCATTCCTCAGCAAATGATGATGAGCAGGAACCTCTGGCTGAGCTTTCCAATTCTTCCGACAAAGATATTGACATTCCCGGAAACTTCGATTAG | 1041 | 0.4573 | MAAVNPQPLQARPFEKQVRGSVPIEDDDGDYEDGGASGHAMYDLEEGNVNSVAVPNHVGVVTTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGARDVSACIPFVEVPFDESSKGIGDTPKQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASFKGSPGSSILDHSTESFHQDGAYSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLTWANKGTLRDLNKGGRNLPVEQSELETPLEVKPIILEGELLGVHDMQGISEDPSNDIAERSNNHAVTDEELRSGEHLSNSLSAGFVHSSANDDEQEPLAELSNSSDKDIDIPGNFD | 346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele03g0469 | 346 | Pfam | tify domain | 65 | 96 | IPR010399 | - | |
| Lele03g0469 | 346 | Pfam | CCT motif | 130 | 171 | IPR010402 | GO:0005515 | |
| Lele03g0469 | 346 | ProSitePatterns | GATA-type zinc finger domain. | 201 | 228 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele03g0469 | 346 | SMART | tify_2 | 62 | 97 | IPR010399 | - | |
| Lele03g0469 | 346 | CDD | ZnF_GATA | 200 | 244 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele03g0469 | 346 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 3 | 339 | IPR045280 | GO:0006355 | |
| Lele03g0469 | 346 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 197 | 244 | - | - | |
| Lele03g0469 | 346 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Lele03g0469 | 346 | MobiDBLite | consensus disorder prediction | 297 | 346 | - | - | |
| Lele03g0469 | 346 | SMART | GATA_3 | 195 | 248 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele03g0469 | 346 | Gene3D | - | 195 | 251 | IPR013088 | GO:0006355|GO:0008270 | |
| Lele03g0469 | 346 | ProSiteProfiles | Tify domain profile. | 62 | 97 | IPR010399 | - | |
| Lele03g0469 | 346 | Pfam | GATA zinc finger | 201 | 237 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele03g0469 | 346 | ProSiteProfiles | CCT domain profile. | 130 | 172 | IPR010402 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele03g0469 | Lele-ChrLele03 | 2664694 | 2667854 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele03g0469 | 26 | 261 | Tify Gene Family | AT1G51600 | 47.510 | 1.94e-63 | 202 |
Transcription factors information