Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0468 ATGTACGGACAACTCCCATCAATGAATGTCACCAATCGGATCAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGACAATCACAACATCCGTTACGAAACGCAAGCCCTCGATGATAGCAGTGGTGGAGTCGGGGGCGTTGTGGAGGATGTGAACTCTGATACCGTATATGTTTCCGGCAGTGGTTCTGAATTGTCCATCCCGCACGAGGATCCTAGCCAACTTACGTTGTCATTTCGTGGTCAAGTATATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATAGCTCCTCTAAATGAGAGGGGTGCGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGCAGCCTCTTTAATCAGGTTTCGTCAGAAGAGAAAAGAGAGATGCTTTGACAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTCGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTAAGAAGCAAGAAGGAGCTAATAGTTTGGGAACAGTCCAAGAGTCAGGGCAGGATGACAATCATTCAGAAACCTCGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGAGGCGTGGGCCATCAGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACTTTGAGGGACTTATCCAAGAAGAACCATGAACATTCTCTTGCACCAGCTGAGCAGGTTGAACGGGATGATTCTCATTCTCGGACTGCTAACCCTGCACGTAACAATCTTGGGGCTTTCTCTGATAATGATAAGCCTGCATAG 870 0.4747 MYGQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIRYETQALDDSSGGVGGVVEDVNSDTVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPLNERGAMDYPGRCSQPHRAASLIRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSKKQEGANSLGTVQESGQDDNHSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLAPAEQVERDDSHSRTANPARNNLGAFSDNDKPA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0468 289 MobiDBLite consensus disorder prediction 250 289 - -
Lele03g0468 289 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Lele03g0468 289 CDD ZnF_GATA 206 251 IPR000679 GO:0006355|GO:0043565
Lele03g0468 289 Gene3D - 197 257 IPR013088 GO:0006355|GO:0008270
Lele03g0468 289 Pfam tify domain 76 107 IPR010399 -
Lele03g0468 289 MobiDBLite consensus disorder prediction 181 220 - -
Lele03g0468 289 MobiDBLite consensus disorder prediction 1 27 - -
Lele03g0468 289 ProSiteProfiles GATA-type zinc finger domain profile. 201 260 IPR000679 GO:0006355|GO:0043565
Lele03g0468 289 SMART tify_2 73 108 IPR010399 -
Lele03g0468 289 MobiDBLite consensus disorder prediction 175 226 - -
Lele03g0468 289 Pfam GATA zinc finger 207 243 IPR000679 GO:0006355|GO:0043565
Lele03g0468 289 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Lele03g0468 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 255 - -
Lele03g0468 289 Pfam CCT motif 140 182 IPR010402 GO:0005515
Lele03g0468 289 MobiDBLite consensus disorder prediction 250 271 - -
Lele03g0468 289 MobiDBLite consensus disorder prediction 1 16 - -
Lele03g0468 289 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Lele03g0468 289 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Lele03g0468 289 PANTHER GATA TRANSCRIPTION FACTOR 28 25 271 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0468 Lele-ChrLele03 2657507 2662085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0468 1 268 Tify Gene Family AT4G24470 54.513 1.51e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele03g0468 CCT 1.9e-14 CL0281