Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0437 ATGTGCCGTCCGTGTCCTCCGTTTCTTCCTCCTTACGCGTGCCCTCTTCTTTTCATTCCCGTTTTCTTCATTGTTTTCACCATTGATTTTACTAACCACGTATCCTGTACGGATAGCGTGCCAGCTCTTTTCATGATTATGGAATTTGAGGAGCAAGATCAGGAGCACGACGAGGCAGAGGAAGAAATGGGGATCCCCCTGCCCCCGGCGGGTTACGACTCGTCTCGCTCCAAAACAGGTGCTGCCTTCGGAACCGAGGGAGGTGCATCCGCCCTGACCGGGGGCAGCAAAGGCAGTCCAACGGGAACAGTCAGGTACAGAGAGTGTCAGAAGAATCACGCCGTCAGCATCGGCGGCCACGCCGTCGACGGTTGCGGTGAGTTTCTAGCGGCGGGAGAGGAAGGCACGCTCGACGCTCTCAAATGCGCCGCCTGCAACTGTCACCGCAACTTCCACCGCAAGGAGATCGAGGGAGAAACTAGCTCCTTTCACATGCCGCAGCCGCACCACCCCCAGTACCCACATCAATTTCCCCCTTACTACCGTGGGCCGCCGCCGCCAGGCTTAGGATACCTCCACCACCACCTGACAAATCCCGCGATGGCACATCACCGGCCTCTGGCTCTACCAGCCGCGGCATCCGGCGGGGGACTGAGTAGAGAAGAGGAAGACATGTCCAATCCCAGTAGCAGCGGAGGTGGAGGTTTCGGCGGTGGGGAAAGGAGGAAACGGTTTCGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCACTTTCGGAAAAGGTGGGGTGGAGACTCCAGAAGCATGACGAAGCAGCGGTGGAGCAATTCTGTGCGGAGACCGGCGTCAAGAGACAGGTACTCAAGGTCTGGATGCATAATAACAAAAACACTCTCGGTAAGAAACCCTAA 918 0.5697 MCRPCPPFLPPYACPLLFIPVFFIVFTIDFTNHVSCTDSVPALFMIMEFEEQDQEHDEAEEEMGIPLPPAGYDSSRSKTGAAFGTEGGASALTGGSKGSPTGTVRYRECQKNHAVSIGGHAVDGCGEFLAAGEEGTLDALKCAACNCHRNFHRKEIEGETSSFHMPQPHHPQYPHQFPPYYRGPPPPGLGYLHHHLTNPAMAHHRPLALPAAASGGGLSREEEDMSNPSSSGGGGFGGGERRKRFRTKFTQEQKEKMLALSEKVGWRLQKHDEAAVEQFCAETGVKRQVLKVWMHNNKNTLGKKP 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0437 305 MobiDBLite consensus disorder prediction 210 242 - -
Lele03g0437 305 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 105 156 IPR006456 -
Lele03g0437 305 FunFam Zinc-finger homeodomain protein 2 231 303 - -
Lele03g0437 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 106 155 IPR006456 -
Lele03g0437 305 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 242 299 IPR006455 -
Lele03g0437 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 82 301 - -
Lele03g0437 305 MobiDBLite consensus disorder prediction 69 100 - -
Lele03g0437 305 Pfam ZF-HD protein dimerisation region 104 156 IPR006456 -
Lele03g0437 305 SUPERFAMILY Homeodomain-like 229 303 IPR009057 -
Lele03g0437 305 MobiDBLite consensus disorder prediction 161 184 - -
Lele03g0437 305 Gene3D - 227 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0437 Lele-ChrLele03 2485318 2486844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0437 47 301 ZF-HD Transcription Factor Family AT4G24660 52.529 9.44e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele03g0437 ZF-HD_dimer 4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0437 03 2485318 2486844 Lele03g0437 03 2485318 2486844 ECH
Lele01g0424 01 2480028 2485699 Lele03g0437 03 2485318 2486844 hybridization
Lele02g0421 02 2430512 2434647 Lele03g0437 03 2485318 2486844 hybridization