Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0426 ATGGCGCTATTTCGTTTCTTCGGCCTCCCATCAACAGCCAACCTCTCCGCAGAACACCAACTTCGCCCACTCTCTTCTCTCCATAATTTTCCCCATCCTTCCACCGGCAATCTCTCGTTTTGTCGCTCGCCTTCCTCGTTCCATTTTCTACGTCTGTCCCTTTCGCATCCCTCAAACTATACAACCAAAGAAATTTCTCATTTTCTACCACCATTTGCCACTACATCCCAAGAACAAGCTCTTAGTTCCTCTCCTTCAGATGTTTCCGATGACAGCCAACCAACTGAGGCACAAGCTGAAGAATTCTCTCGAACCAGGTTGGTTGCTCAGAACCTACCTTGGACCTGCACTCCTGAAGACGTTCGTTCTTTGTTCGAGAGGCATGGAACAGTCCTAGACGTTGAGTTATCGATGTATAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGAAATGGGTTCGGAAGAAGAGGCTCTTGCGGCTTTGAATAGTCTCGAATCGTATGAATATGAAGGCCGTGCACTGAGACTCGCATATGCTAGGCCGAAAAAGAAGAAAGATCCACCTCCTGTGCAGCAGAAAACAGTAACATTTAACATGTTTGTCGCAAATTTGTCCTATGAAGCGAGGGCTAAGGATCTCAGGGAGTTTTTTGATTCGGGAAGGGGCAGTGTTGTTTCTGCCGAGGTTATATTTCATGACAACCCTAGAAAGTCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAAAGAAGCTGATGCTGCCCTTACTGAGTTCCAAGGGAAGAATTTTATGGGAAGACCAATCAGGGTGGCACGTAGTAAGCAGTTTGTTAAACAACCAGTAGAGGAGAGTGCAAGGTCTGAAGATACATCTTCTGAGACCAGCGTGAATGGGGTAGAAGCAGATGAAGCAGATTGA 924 0.461 MALFRFFGLPSTANLSAEHQLRPLSSLHNFPHPSTGNLSFCRSPSSFHFLRLSLSHPSNYTTKEISHFLPPFATTSQEQALSSSPSDVSDDSQPTEAQAEEFSRTRLVAQNLPWTCTPEDVRSLFERHGTVLDVELSMYNKTRNRGLAFVEMGSEEEALAALNSLESYEYEGRALRLAYARPKKKKDPPPVQQKTVTFNMFVANLSYEARAKDLREFFDSGRGSVVSAEVIFHDNPRKSAGYGFVSFKSKKEADAALTEFQGKNFMGRPIRVARSKQFVKQPVEESARSEDTSSETSVNGVEADEAD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0426 307 CDD RRM_SF 201 272 - -
Lele03g0426 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Lele03g0426 307 MobiDBLite consensus disorder prediction 79 102 - -
Lele03g0426 307 SUPERFAMILY RNA-binding domain, RBD 105 273 IPR035979 GO:0003676
Lele03g0426 307 SMART rrm1_1 106 178 IPR000504 GO:0003723
Lele03g0426 307 SMART rrm1_1 199 273 IPR000504 GO:0003723
Lele03g0426 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 271 IPR000504 GO:0003723
Lele03g0426 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 176 IPR000504 GO:0003723
Lele03g0426 307 Gene3D - 187 288 IPR012677 -
Lele03g0426 307 Gene3D - 71 186 IPR012677 -
Lele03g0426 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Lele03g0426 307 MobiDBLite consensus disorder prediction 277 307 - -
Lele03g0426 307 PANTHER OS02G0815200 PROTEIN 40 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0426 Lele-ChrLele03 2425560 2427258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0426 105 277 Eukaryotic Initiation Factors Gene Family AT3G16380 32.065 1.06e-15 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0426 03 2425560 2427258 Lele25g0383 25 2331439 2333437 CCT
Lele03g0426 03 2425560 2427258 Lele26g0399 26 2407595 2409186 CCT
Lele03g0426 03 2425560 2427258 Lele27g1700 27 22378399 22380431 CCT
Lele03g0426 03 2425560 2427258 Lele28g0393 28 2413806 2415460 CCT
Lele03g0426 03 2425560 2427258 Lele03g0426 03 2425560 2427258 ECH
Lele01g0414 01 2421629 2423326 Lele03g0426 03 2425560 2427258 hybridization
Lele02g0410 02 2383300 2384995 Lele03g0426 03 2425560 2427258 hybridization