Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0413 ATGGAACCACCTTCTACGGAGCAGACGTCGGGAGTACCCCGAGATCGCAGAGCTGCTGCTCTTGGAGATCTTCGAGTCCTCCCTGATGAAATCCTCTGCGCCATTTTAGAGGAACTCACTGCTCGAGATGTGGCTCGCCTCGCTTGCGTCAGCAGTGTAATGTACATATTGTGTAATGAAGAACCACTATGGATGAGTTTATGCCTTAAAGGAGCGTCTGGTTTACTTCAGTATAAAAGCTCTTGGAAGAAGACTGCTCTGCATCGTGAGAATTTGCCAGAAAAATACATTGAGTGTAACAGAGGATTTCTGCATTTTGATGGATTTAATTCGTTATATTTGTATAGAAGATTATACAGGTCTCATACCAAGTTGGATACATTTTATGTGGATAATGGAAATGTGGAAAGAAGAAAAGATGTCTCTCTAGAAAACTTCCGTGATGAGTATGATGGGAAGAAACCGGTAATGCTTACTGGATTAGCTGATTCATGGCCTGCGAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTGTGGAGATGTAGCATTTAAGATTTCCCAAAGGAGGTCTGGGAAGGTCTTGATGAAGTTTAAGGATTATGTTTCATACATGAAACTTCAGCATGATGAAGATCCATTGTACATTTTTGATGAAAAGTTTGGTGAAGTTGCACCCAGCTTGCTGAAGGATTACTGTGTGCCTCATTTGTTTCAAGAAGATTACTTTGATATTTTAGATGCAGATAAACGACCACCCTACAGGTGGCTCATTATTGGGCCAGAGAGATCTGGTGCTTCTTGGCATGTTGATCCTGCTCTTACTAGTGCATGGAATACTCTTCTTTCTGGCCGCAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGAGTCACAGTGCATGTCAATGAAGATGATGGTGATGTTAACATTGAGACACCATCATCACTGCAGTGGTGGCTGGACTTTTATCCACTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAACTACCCGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTCTAAACTTAGAAACAACTATCGCTGTCACGCAGAATTTTGTGAATTCCTGTAACTTTGAGTTTGTGTGTTTGGATATGGCCCCTGGTTATCGTCACAAAGGAGTTTGCCGTGCTGGATTGCTAGCTCTTGATGATGATGGTTATGAAGATGTGAAAAAGAATATGTTCTGTGACGAACAGAATCCAAGTTGTTCCATTCTATCAAGAAGGGAGAAAAGAGCCAGAAATGAAGAAGATGGAGATGATTTGAATAATGAAAGAACAAGAAATGGCGCAACTATAAGCTATAATGTATGGAAAGATGGATTTTCTTATGATATAAATTTCTTATCCTTGTTTTTGGATAAAGATAGGGACCACTACAGGTCCCCTTGGAGCTCAGGCAACAGCATTGGCCAGCGAGAACTGAGAGAATGGTTATCCAAACTTTCGATTGTAAAACCAGAAATGAGAGAGTTAATATGGAAGGGGGCATGTATTTCACTAAATGCTGACAATTGGTCAGAATGCCTGGCTGAAATTTGTTCCTTGCACGATATGCCCTCGCCCCTTGATGATAAAAGACTTCCTGTTGGTACGGGTAGCAATCCTGTTTTTCTTGTGGGAAACACAGTTGTCAAAATCTTTGTTGAAGGAGGGCTAGAAGCTGCACTTTATGGTTTAGGCACAGAGGGAGTCCCTGATATTGTTATCAAGAATAATCTACCCAGGCAAAAATGTGAAGTTGATGATTTCTCATTTGGTGTATGGGGCAAGAAACAGTTTGAATATAGGAATGCTGAGATGCCAACACACGAATCAGTTAGTTCAGCTAGCCACTCGAATATATGGCCTTACATTATAACAAAACGTTGCAAGGGTAAAATATTTGCAGAGTTAAGAGATAGACTATCAAGGGAAGATGTAACAAACTTAGCTTCCTTCTTGGGAGAACAGTTGCGCCACATTCACCTTTTACCACGTCCACCATTGAATATTTCACCTTCCTCTGATATTGAACAGGATTCAGGCTTGCCCAAGATCAATGGTCATGTTTCAAGTTTTAATTATAAATCGAACATGGTAGCAGAGTGGGAAATCTTCATTGGAACTTTAACAAGAAAGAGGAAGGATGTCTTGAGCCGTTTGACTAAGTGGGGAGACCCGATTCCTAGGAAATTGATAGAGAAGGTCGATGAATATATCCCTCATCTATTTGCAAACATATTGAATATAACTGAGGGCAATGCTTGTAAACCATGCTCCTGGATACACTCTGACATTATGGATGATAACATTTACATGGAACCATCTTGTGTTCCTACCTCAAGTGAAACTTCTGATGAGGGAGCGCTGGCAGACAATGGTTTTGTATGTGGCTCCAGTGTAAATAGAGATGTGAAATCATGGCGACCTAGCTACGTCCTTGATTTCAGTGATCTTTCAATAGGTGATCCTATATTTGATTTGATACCAATTTATTTAGATGTATTTAGAGGTGATTCTTATCTCCTAAAGCTGTTTTTGGAAAGCTACAAGCTTCCTTTTGCGATTAATAATTCAAAGAATGAGTCAACGGAGAATGATGATAAATTTGGCCGGCTTTCGTATCTTGCCATGTGCTACTGTATATTGCAGGACGATGATGTCTTGGGAGCCATTTTTAGCATATGGGAAGATCTTAGATCAGCAAATTCATGGGAAGAGGTTGAATTGACAGTGTGGGGGGAGTTGAACAATTACAAAGGCTTTCCTTGA 2808 0.4085 MEPPSTEQTSGVPRDRRAAALGDLRVLPDEILCAILEELTARDVARLACVSSVMYILCNEEPLWMSLCLKGASGLLQYKSSWKKTALHRENLPEKYIECNRGFLHFDGFNSLYLYRRLYRSHTKLDTFYVDNGNVERRKDVSLENFRDEYDGKKPVMLTGLADSWPARHKWTTDQLLLNCGDVAFKISQRRSGKVLMKFKDYVSYMKLQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDYFDILDADKRPPYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSCNFEFVCLDMAPGYRHKGVCRAGLLALDDDGYEDVKKNMFCDEQNPSCSILSRREKRARNEEDGDDLNNERTRNGATISYNVWKDGFSYDINFLSLFLDKDRDHYRSPWSSGNSIGQRELREWLSKLSIVKPEMRELIWKGACISLNADNWSECLAEICSLHDMPSPLDDKRLPVGTGSNPVFLVGNTVVKIFVEGGLEAALYGLGTEGVPDIVIKNNLPRQKCEVDDFSFGVWGKKQFEYRNAEMPTHESVSSASHSNIWPYIITKRCKGKIFAELRDRLSREDVTNLASFLGEQLRHIHLLPRPPLNISPSSDIEQDSGLPKINGHVSSFNYKSNMVAEWEIFIGTLTRKRKDVLSRLTKWGDPIPRKLIEKVDEYIPHLFANILNITEGNACKPCSWIHSDIMDDNIYMEPSCVPTSSETSDEGALADNGFVCGSSVNRDVKSWRPSYVLDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKLFLESYKLPFAINNSKNESTENDDKFGRLSYLAMCYCILQDDDVLGAIFSIWEDLRSANSWEEVELTVWGELNNYKGFP 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0413 935 ProSiteProfiles JmjC domain profile. 224 387 IPR003347 -
Lele03g0413 935 SUPERFAMILY Protein kinase-like (PK-like) 634 865 IPR011009 -
Lele03g0413 935 SUPERFAMILY F-box domain 18 84 IPR036047 GO:0005515
Lele03g0413 935 Pfam Cupin-like domain 147 372 IPR041667 -
Lele03g0413 935 Pfam F-box-like 26 70 IPR001810 GO:0005515
Lele03g0413 935 ProSiteProfiles F-box domain profile. 21 67 IPR001810 GO:0005515
Lele03g0413 935 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 21 550 - -
Lele03g0413 935 FunFam F-box protein At1g78280 115 372 - -
Lele03g0413 935 Gene3D Cupin 114 372 - -
Lele03g0413 935 Gene3D - 18 97 - -
Lele03g0413 935 SUPERFAMILY Clavaminate synthase-like 134 379 - -
Lele03g0413 935 SMART cupin_9 215 382 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0413 Lele-ChrLele03 2370908 2378204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0413 14 931 Glycosyltransferase AT1G78280 58.642 0.0 1123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele03g0413 Cupin_8 3.3e-21 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0413 03 2370908 2378204 Lele03g0413 03 2370908 2378204 ECH
Lele01g0402 01 2365339 2372524 Lele03g0413 03 2370908 2378204 hybridization
Lele02g0401 02 2342878 2349645 Lele03g0413 03 2370908 2378204 hybridization