Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0407 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACCACATCCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACCGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTCGAGGCTGTTATAATCACCGATAAGAATACAGGAAAATCTAAAGGCTATGGATTCGTAACATTCCGTGATCCTGAATCAGCCAGAAGGGCTTGCGCTGATCCAAACCCAATAATAGACGGAAGAAGAGCAAACTGTAATATTGCTTCTCTGGGACGACCTCGACCTTCCCCGCCGCGAGGGAGGAGTACATTCCAAGGTGGGAGCGCATCACAGAGTGCAGCATCATATGGTGGCGCTCCAGCAGCCGTACCGCCGGCGCCTCCGCCTCCCCCTCCGGCGGCGGCGGGGGGCGGGCTGATGTACCCGCCATATGGCTACTCTCCCTATTCTCCTGATTACGGGTACCACCAAGCGGCAATGTACAACCCCCATCAGATTCAGCAACCACAATACTACCAGCAAGTGTATGGAGCTTCCTCATCGGGAGTGAGTCCCCCGTATTACTATGGCGGGTACCCTGTGCAGCCACCCAGGGCCTCTTATTCTACGCCCCAGCCCCAGCGCCTGCCACCTGGGCCCTCCTATCTGTACTACCCTTACCCTCCTTCACCTTCACCCACACCCATGGATCTCTCCTTCTCCGCCTATGGTCCCCCTCGACAACCAACACTGTTAAGGCAGCCCTTCGTCCCTTCCTCTTCTACTGATTCACAGTCGACACAGTCTCAGCAGCAGCGTACCTCCTCCGAGACCGCGGCTGGAATAGTTACGGCAGCTTCATCGGAAAGTGCGAGTACTCAAGGGAAAAACTAA 882 0.5522 MAYPHYRSQFGDTTSTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPSPPRGRSTFQGGSASQSAASYGGAPAAVPPAPPPPPPAAAGGGLMYPPYGYSPYSPDYGYHQAAMYNPHQIQQPQYYQQVYGASSSGVSPPYYYGGYPVQPPRASYSTPQPQRLPPGPSYLYYPYPPSPSPTPMDLSFSAYGPPRQPTLLRQPFVPSSSTDSQSTQSQQQRTSSETAAGIVTAASSESASTQGKN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0407 293 MobiDBLite consensus disorder prediction 202 231 - -
Lele03g0407 293 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele03g0407 293 MobiDBLite consensus disorder prediction 104 118 - -
Lele03g0407 293 PANTHER BOULE-RELATED 6 268 IPR037366 -
Lele03g0407 293 MobiDBLite consensus disorder prediction 249 293 - -
Lele03g0407 293 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele03g0407 293 Gene3D - 3 111 IPR012677 -
Lele03g0407 293 MobiDBLite consensus disorder prediction 90 133 - -
Lele03g0407 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lele03g0407 293 MobiDBLite consensus disorder prediction 201 293 - -
Lele03g0407 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lele03g0407 293 SUPERFAMILY RNA-binding domain, RBD 8 117 IPR035979 GO:0003676
Lele03g0407 293 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0407 Lele-ChrLele03 2340990 2343932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0407 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 1.63e-15 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0342 25 2089314 2094486 Lele03g0407 03 2340990 2343932 CCT
Lele03g0407 03 2340990 2343932 Lele03g0407 03 2340990 2343932 ECH
Lele01g0397 01 2332014 2334879 Lele03g0407 03 2340990 2343932 hybridization
Lele02g0394 02 2310522 2313509 Lele03g0407 03 2340990 2343932 hybridization