Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0400 ATGGGAAGGTCTCCATGCTGTGATGAGAATGGACTTAAGAAAGGACCCTGGACTCCCGAGGAAGACGAAAAGCTTGTGCTCTTCATACAGAAACATGGCCATGGAAGCTGGAGAGCTCTCCCCAAACTTGCGGGTCTTAACAGATGTGGAAAGAGCTGTAGGCTGAGGTGGACCAACTATTTAAGACCTGATATTAAGAGGGGCAAGTTTTCTCAAGAAGAGGAGCAAACTATTCTCCACCTCCATTCCATCCTTGGAAACAAGTGGTCTGCAATTGCATCCCATCTTCCAGGCAGGACAGATAATGAGATTAAGAATTTCTGGAATACTCATTTAAAGAAGAAGCTGATTCAGATGGGCTTTGACCCAATGACTCATCAGCCAAGAACTGACCTTGTTTCAAGCTTGCCCTATCTGCTGGCTTTGGCCAACATGACTGGCCTAATTGATCATCAATCACTGGATGAACAAGCCCTGAAATTACAAGCAGAAGCAGTTCAGTTGGCCAAGCTTGAATACCTTCATTATTTACTGCAACCCCCAAGTTCGTTGACTACCGACTCCTATGACCAGAGTGCCAACATCGCTAACACGGAGGCCCTCAATTTGCTAACTTCAATGTCTAGTGTCAACGATAATCCAGTTATAAACTGCCCACAAATGGATAACGCATCCTTATTTTCTAATGTGATTGCTGGCTCTCAACCACTCCACCATCCAAACATGTTATCTCAAATTTCAGACCCACAAGTCTCTTTCAGTACTTCCCAACCATGTTTGAATAATAATAGTGAGAAGAATCAAGGTACCAATAACTTTACAATGATCAGCGAAGGGGATAACATAGCGAATGACACTTCATGGATGATTCCGTCTCCTGCTGCATCTTTTCAACCGACTATGAGGGCGGGGACCTCATCAAACAGCAATCCTGGAGATGCCAGCAGCCGCACTTCGAGCTATGGAGGAGGAACCTCATCTTTTTGGCCTGAACTCTTTTTTGACGACCCAATTATTCATAATGCATGA 1029 0.4451 MGRSPCCDENGLKKGPWTPEEDEKLVLFIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTGLIDHQSLDEQALKLQAEAVQLAKLEYLHYLLQPPSSLTTDSYDQSANIANTEALNLLTSMSSVNDNPVINCPQMDNASLFSNVIAGSQPLHHPNMLSQISDPQVSFSTSQPCLNNNSEKNQGTNNFTMISEGDNIANDTSWMIPSPAASFQPTMRAGTSSNSNPGDASSRTSSYGGGTSSFWPELFFDDPIIHNA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0400 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele03g0400 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele03g0400 342 SMART sant 66 114 IPR001005 -
Lele03g0400 342 SMART sant 13 63 IPR001005 -
Lele03g0400 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele03g0400 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele03g0400 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele03g0400 342 Gene3D - 69 116 - -
Lele03g0400 342 Gene3D - 13 66 - -
Lele03g0400 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 263 - -
Lele03g0400 342 MobiDBLite consensus disorder prediction 293 322 - -
Lele03g0400 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele03g0400 342 FunFam Transcription factor MYB39 69 130 - -
Lele03g0400 342 CDD SANT 16 61 IPR001005 -
Lele03g0400 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele03g0400 342 FunFam MYB-related transcription factor 13 66 - -
Lele03g0400 342 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0400 Lele-ChrLele03 2301358 2302605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0400 1 339 MYB Transcription Factor Family AT1G34670 53.678 2.66e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele03g0400 Myb_DNA-binding 3.4e-16 CL0123