LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g0384	ATGACTTTAGCCAACGAAGTTAGTGTCGTGAAGATGACGAACCAGAATCTGGTGGTTCCTGATGTAAAATCATGTATTAACACCATTATTGAGGTGGCCGTGTCCATTTCCAACTCGCCTATGCTTCCCAGCACGGCAGTGCCAGAATCTCTGGTCATGCTTGGTGGGATTTTTGGGAAAAAGATAATGAAGAGGCTTGACGATGGAGGAGGAAAAGGTGGAGCCAGAGTCAATGCCTGGATTGATTCAATGAGAGCTTCCTCTCCCACACGAGTCAAATCCTCCATTTCTGCTTCTCAGAACCAACACTTGAGTTCTTGGGCTCTTCATCATCCTTCGGCGATCAACATGTTTGATCAGATAATCGATAACTCAAAAGATAAGCAAATAGTAATCTTCCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCTGATAAAGCATTCATGACTAAGAAGATGAGAGCAACGGTAAAGGATATAGCAAAACACTTTCCCACGGCCATCGTGAGTGGAAGGCGGAGAGACAAGGTTTACAAGTTTGTCAGATTAGCAGAGCTGTACTACGCAGGCAGCCATGGCATGGACATCAAAGGACCGACAAAGACCCAAGGATCTAAGAAAGGTAATCAAGCGGCCCCCTTCCAACCTGCAAGCCAATTCTTGCCCATGATCAATGAGGTTTACAAGATCTTGTTGGAGAAAACAAAATCCGTGGAAGGGGCTAAGGTTGAGAATAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGCGTTGACGAAAAGAGCTGGGGTGCACTGGCGGAGAAAGTTCGACTAGTGATGAATCAGTACCCAAAACTTAAGCTGACGGAAGGCAGAAAAGTGCTCGAGATCCGACCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTTTTGTTACATTCACTTGGATTCGCCAATTCCAAGGATGTCTTCCCCATCTACATCGGCGATGACCGAACTGACGAGGATGCTTTTAAGGTGTTACGTAGGAGAGGCCAAGGGACCGGAATTCTCGTATCTCAAGTTCCCAAAGAAACAGAAGCTTCCTACAATTTACAAGACCCATCAGAGGTTGAGCAATTTTTGCGGCGTTTGGTAGAGTGGAAGAGGAGAGTAATAATGAGAGTTGAGTATTAG	1167	0.4567	MTLANEVSVVKMTNQNLVVPDVKSCINTIIEVAVSISNSPMLPSTAVPESLVMLGGIFGKKIMKRLDDGGGKGGARVNAWIDSMRASSPTRVKSSISASQNQHLSSWALHHPSAINMFDQIIDNSKDKQIVIFLDYDGTLSPIVADPDKAFMTKKMRATVKDIAKHFPTAIVSGRRRDKVYKFVRLAELYYAGSHGMDIKGPTKTQGSKKGNQAAPFQPASQFLPMINEVYKILLEKTKSVEGAKVENNKFCLSVHFRCVDEKSWGALAEKVRLVMNQYPKLKLTEGRKVLEIRPTIKWDKGKALEFLLHSLGFANSKDVFPIYIGDDRTDEDAFKVLRRRGQGTGILVSQVPKETEASYNLQDPSEVEQFLRRLVEWKRRVIMRVEY	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g0384	388	TIGRFAM	T6PP: trehalose-phosphatase	128	376	IPR003337	GO:0003824\|GO:0005992
	Lele03g0384	388	Pfam	Trehalose-phosphatase	133	366	IPR003337	GO:0003824\|GO:0005992
	Lele03g0384	388	FunFam	Trehalose 6-phosphate phosphatase	220	296	-	-
	Lele03g0384	388	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	70	381	IPR044651	GO:0004805\|GO:0005992
	Lele03g0384	388	SUPERFAMILY	HAD-like	131	380	IPR036412	-
	Lele03g0384	388	Gene3D	-	220	385	IPR023214	-
	Lele03g0384	388	Gene3D	-	130	215	IPR023214	-
	Lele03g0384	388	FunFam	Trehalose 6-phosphate phosphatase	130	216	-	-
	Lele03g0384	388	FunFam	Trehalose 6-phosphate phosphatase	226	385	-	-
	Lele03g0384	388	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	132	341	IPR006379	-
	Lele03g0384	388	CDD	HAD_TPP	131	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g0384	Lele-ChrLele03	2225097	2227367	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g0384	121	377	Trehalose Biosynthesis Gene Families	AT1G06410	27.839	3.24e-10	60.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele03g0384	03	2225097	2227367	Lele25g0346	25	2118382	2119446	CCT
	Lele03g0384	03	2225097	2227367	Lele26g0363	26	2192880	2193561	CCT
	Lele03g0384	03	2225097	2227367	Lele27g1735	27	22626956	22627645	CCT
	Lele03g0384	03	2225097	2227367	Lele28g0362	28	2215252	2216477	CCT
	Lele03g0384	03	2225097	2227367	Lele03g0384	03	2225097	2227367	ECH
	Lele01g0377	01	2202457	2204739	Lele03g0384	03	2225097	2227367	hybridization
	Lele02g0374	02	2176993	2178982	Lele03g0384	03	2225097	2227367	hybridization