Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0378 ATGCTCGCTGCTGTAACTCTGTCATCTTCTTCTTCAGACCTTCTTGTAATAAACTCTACACATTTCTACATCACCTCCTCGTTTACATCGCCACCTCTATATAAGCAGAGAATGGCTGCTAAAGTCTGTCACCAGGCTATTGGTACTTTTCAGTCTGAGTCGCTTCTTAAAAATTCTAAAAATCACCAAAATCTTCAGAAGAACTCAATAAGATTGATAGCAAAGGATTTTAGCAGCTGCAACAGCTTGTCAAGGAGAGCTGATCAGAGGAATTGTTGCATAATCCGATCCTCAGCTTCTCAAACTTCGGTGGTTGATCCAGTGTTATCCCCTTCAAGAAGCAGCACAAGTGACAGTTCCAAGAAATCAAATGAAGCAGCTTTGATCCTTATTCGACATGGCGAATCATTATGGAATGAAAAGAATTTATTCACAGGCTGCGTAGATGTCCCACTAAGCAAGAAGGGCATAGATGAGGCGATTGAAGCTGGCAAAAGGATCAGTAGCATTCCTGTTGATGTCATATTTACATCTGCTCTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGAAGAAAGGTGCCTATCATCATACACAATGAGAGTGAACAAGCAAGAGCATGGAGCCAAGTATTTAGTGAAGATACAAAAAAGCAATCCATTCCAGTCATAGCAGCTTGGCAACTAAATGAAAGAATGTATGGAGAGCTACAGGGTCTTAACAAGCAGGAAACAGCTGATAGATATGGGAAAGAACAAGTCCATGAATGGCGCCGAAGCTATGATACACCTCCTCCAAATGGTGAGAGTTTGGAAATGTGTGCTGAAAGGGCAGTTGCTTATTTCAGAGAGCAGATTGAACCCCAGCTTTCATCTGGAAAAAATGTTATGATTGCTGCTCATGGGAATTCATTGAGATCCATTATCATGTATCTTGACAAACTAACTTCCCAAGAGGTCATTAGCTTGGAATTATCCACTGGAATTCCCATGCTTTATATTTTCAAAGAAGGAAGATTCATTAGAAGGGGGAGTCCCATAGGACCAACTGAAGCTGGAGTTTATGCCTATACTAGGGGAATGCGTCCTGCATTGTCTGCTGCATCACGTTAG 1128 0.4211 MLAAVTLSSSSSDLLVINSTHFYITSSFTSPPLYKQRMAAKVCHQAIGTFQSESLLKNSKNHQNLQKNSIRLIAKDFSSCNSLSRRADQRNCCIIRSSASQTSVVDPVLSPSRSSTSDSSKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRRKVPIIIHNESEQARAWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDTPPPNGESLEMCAERAVAYFREQIEPQLSSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPTEAGVYAYTRGMRPALSAASR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0378 375 CDD HP_PGM_like 128 347 IPR013078 -
Lele03g0378 375 PANTHER PHOSPHOGLYCERATE MUTASE 116 365 IPR005952 GO:0004619|GO:0006096|GO:0016868
Lele03g0378 375 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 130 139 IPR001345 GO:0003824
Lele03g0378 375 SMART PGAM_5 127 313 IPR013078 -
Lele03g0378 375 Pfam Histidine phosphatase superfamily (branch 1) 128 204 IPR013078 -
Lele03g0378 375 Pfam Histidine phosphatase superfamily (branch 1) 223 331 IPR013078 -
Lele03g0378 375 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 125 352 IPR005952 GO:0004619|GO:0006096|GO:0016868
Lele03g0378 375 Gene3D - 117 348 IPR029033 -
Lele03g0378 375 SUPERFAMILY Phosphoglycerate mutase-like 128 344 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0378 Lele-ChrLele03 2181580 2184913 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0340 26 2031169 2032701 Lele03g0378 03 2181580 2184913 CCT
Lele27g1760 27 22768952 22771602 Lele03g0378 03 2181580 2184913 CCT
Lele03g0378 03 2181580 2184913 Lele03g0378 03 2181580 2184913 ECH
Lele01g0372 01 2161731 2164339 Lele03g0378 03 2181580 2184913 hybridization
Lele02g0367 02 2131943 2136831 Lele03g0378 03 2181580 2184913 hybridization