Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0350 ATGTGTTTGGATTGGGAATTCCAGAAAGACATCAATCAACTTGCTACCCATGCAGTTGAGAGCACCCGCATGGAAAATGACCGAGGTGGACAACGGTGGGAAATGGCGCAAACGCTAGCAATGCCTGTAGCACCTTCTCTGTCTGTTATTTGCGATACCCTCGCTTCAAGTTCGCTTTCAAGAAGCGTCTCTTTCCGATTCTCGAACCCTCCTATGGTTCAAGGTCTAAGCATCCAATGTGTTCGTGTTGGAGGTGTAGAGATCCCAAACAGCAAGCGAGTTGAGTTCTCACTCCAGTATATACATGGAGTTGGACGGAGCAGAGCTCGGAAAATCCTGTGCGATTTAAACATGGACAACAAAATCACGAAGGACTTGACTGAGGAGGAACTCATCACTCTCAGAGATGAGGTCTCCAAGTACATGATTGAAGGCGACTTGAGGAGGTTCAATGCACTTAATATAAGGAGATTGAAGGAGATCCAGTGCTACAGAGGGGTCAGACATATTCAGGGGCTGCCCTGCAGAGGACAGCGCACCAAGAACAATTGCCGGACCTTGAAGGGGAAGAAGGTCGCCATTGCAGGAAAGAAGAAGAAGTAA 603 0.4793 MCLDWEFQKDINQLATHAVESTRMENDRGGQRWEMAQTLAMPVAPSLSVICDTLASSSLSRSVSFRFSNPPMVQGLSIQCVRVGGVEIPNSKRVEFSLQYIHGVGRSRARKILCDLNMDNKITKDLTEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0350 200 ProSitePatterns Ribosomal protein S13 signature. 165 178 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele03g0350 200 TIGRFAM uS13_bact: ribosomal protein uS13 82 191 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele03g0350 200 ProSiteProfiles Ribosomal protein S13 family profile. 83 189 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele03g0350 200 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 73 198 - -
Lele03g0350 200 Gene3D 30s ribosomal protein s13, domain 2 150 200 IPR027437 -
Lele03g0350 200 FunFam 30S ribosomal protein S13 72 149 - -
Lele03g0350 200 Pfam Ribosomal protein S13/S18 82 186 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele03g0350 200 Gene3D - 81 149 - -
Lele03g0350 200 SUPERFAMILY S13-like H2TH domain 81 192 IPR010979 GO:0003676
Lele03g0350 200 FunFam 30S ribosomal protein S13 150 199 - -
Lele03g0350 200 Hamap 30S ribosomal protein S13 [rpsM]. 80 196 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0350 Lele-ChrLele03 1984602 1987100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0350 79 198 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.137 5.17e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0350 03 1984602 1987100 Lele03g0350 03 1984602 1987100 ECH
Lele01g0341 01 1990615 1991800 Lele03g0350 03 1984602 1987100 hybridization