Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0332 ATGTCTCTGAGCCCTCCTCGCCAAAGGAGGACTGGCGAACCCAGGACGAACCTCTTGTACTGGTGCTACCAGTGCAACCGAATGGTCCGTCTTCCCTCCGCAGACTCATCCGACATTACCTGCCCACTTTGTTCTGGTCAGTTCCTCTGTGAAATCAATGTCTCAAGGCCTAGACTCGTCTTGGATTTTACAGACCACGATCCATCACCAGAAGCCCGTTTGCTAGAAGCCCTTTCTCTGTTGTTTGACCCGCCAATTAGGCAGTTTCATGGCCGTCTCCACGATCCCCAAGCTCGACCTCCACGCTTCCGTTGGATTCAGGAGCGACACCCATCACGCCCACGAGAAGGCAGACTTCGTGCCGACTCCGACGGTGAAATTCCCGTCCGTCGCGTACCACGTCCACGTCATCGTCGGGCTGCTCAGAGAGCTGGGGATTCCGACGCTGATGTTCCGGTCTCAGAACCTGAAATTCTCCCTCGTCCTCGGACTTGGCTAATTCTTCCACCTATAGATCCGTCTGACCCATTGGAATTGATTCCGCGACGACAACACCCTATACCGCGCGGTGTTAACCCCAGAGACTACTACTTTCGTCCTGGTTTGGGGGAACTGATTGACCAGTTGACGGGAAGTGACAGGCCAGGGGCACAGCCGGCGCCGGAGAGGGCTATCGATGCGATTCCGAGTGTGAAAATCTCGGATGGCCATCTGAAGGAGAACTCATACTGCCCGGTTTGCCAGGAAGAATTTGAACTGGGTGGGGATGCGAGGGAATTGCCATGCAAGCACATATACCATTCAGATTGCATTGTTCCTTGGCTAAGGCTTCACAATTCCTGCCCTGTTTGCCGGCTGGAGGTGCCGGTGCCAGAGTCTTCCGACTCCGGTGAACCCAGTGGAGGAGAAAGCAGGCTGCGAAGGTGCTGGAGATGGAGTCAGATTCGACTGGCTTCTTTGTGGCCTTTCCACGGGAGGCATCGACGGATTCGTACAGAAGGAGAGAATAATGTAATTGCTTCTGCAACGGGAGCGAGTGCAGGGCGGATCCCATGCTGTATTCTTTAG 1068 0.5487 MSLSPPRQRRTGEPRTNLLYWCYQCNRMVRLPSADSSDITCPLCSGQFLCEINVSRPRLVLDFTDHDPSPEARLLEALSLLFDPPIRQFHGRLHDPQARPPRFRWIQERHPSRPREGRLRADSDGEIPVRRVPRPRHRRAAQRAGDSDADVPVSEPEILPRPRTWLILPPIDPSDPLELIPRRQHPIPRGVNPRDYYFRPGLGELIDQLTGSDRPGAQPAPERAIDAIPSVKISDGHLKENSYCPVCQEEFELGGDARELPCKHIYHSDCIVPWLRLHNSCPVCRLEVPVPESSDSGEPSGGESRLRRCWRWSQIRLASLWPFHGRHRRIRTEGENNVIASATGASAGRIPCCIL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0332 355 MobiDBLite consensus disorder prediction 107 131 - -
Lele03g0332 355 Pfam Ring finger domain 243 285 IPR001841 -
Lele03g0332 355 SUPERFAMILY RING/U-box 224 291 - -
Lele03g0332 355 FunFam E3 ubiquitin-protein ligase RING1-like 208 291 - -
Lele03g0332 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 144 289 - -
Lele03g0332 355 SMART ring_2 244 284 IPR001841 -
Lele03g0332 355 MobiDBLite consensus disorder prediction 107 155 - -
Lele03g0332 355 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
Lele03g0332 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 291 IPR013083 -
Lele03g0332 355 ProSiteProfiles Zinc finger RING-type profile. 244 285 IPR001841 -
Lele03g0332 355 CDD RING-H2_RNF126_like 244 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0332 Lele-ChrLele03 1861164 1862522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0332 212 323 C3H Transcription Factor Family AT1G68180 42.982 9.92e-24 96.3