Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0295 ATGTTCCTTCTCTGGTCTATGTTTTTGGAGCTTCGCTTCATACCTTCATCTTCTATGCACCCCACTCTTACAGTTGGTGATCGAATTATTGTCGAGAAGGCTTCGTATTACATCAGGAGTCCTACCGTACAGGATATTGTATTATTCCGAGATCCAACACAGCTATCCGAAGACAAAGCAGCAGATATATTTATCAAGAGAGTTGTTGCAAAAGCAGGAGACTTTGTTCAGGTTCGTCGTGGGTCTCTCTACATCAATGGTGTTGCTCAGAAGGAAGATTATGTAGCAGCACAGCCAACATACACAACGAACTTAACTTATGTACCAAACGGTCATGTTTATGTGTTAGGTGACAATCGAAACAACAGCTGTGATTCCCATGTTTGGGGACCATTGCCTGTCATAAACATAGTGGGGAGATATGTTATGTGTTGTCACAGACCCACAAACACCTGA 456 0.4254 MFLLWSMFLELRFIPSSSMHPTLTVGDRIIVEKASYYIRSPTVQDIVLFRDPTQLSEDKAADIFIKRVVAKAGDFVQVRRGSLYINGVAQKEDYVAAQPTYTTNLTYVPNGHVYVLGDNRNNSCDSHVWGPLPVINIVGRYVMCCHRPTNT 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0295 151 Gene3D Umud Fragment, subunit A 16 148 - -
Lele03g0295 151 TIGRFAM sigpep_I_bact: signal peptidase I 2 144 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele03g0295 151 SUPERFAMILY LexA/Signal peptidase 7 144 IPR036286 -
Lele03g0295 151 Pfam Signal peptidase, peptidase S26 2 143 IPR019533 GO:0004252|GO:0006465
Lele03g0295 151 PANTHER SIGNAL PEPTIDASE I 2 147 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele03g0295 151 ProSitePatterns Signal peptidases I serine active site. 16 23 IPR019756 GO:0004252|GO:0016020
Lele03g0295 151 FunFam Peptidase/ serine-type peptidase 16 145 - -
Lele03g0295 151 CDD S26_SPase_I 10 140 IPR019533 GO:0004252|GO:0006465
Lele03g0295 151 PRINTS Bacterial leader peptidase 1 (S26A) family signature 64 76 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele03g0295 151 PRINTS Bacterial leader peptidase 1 (S26A) family signature 108 127 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele03g0295 151 PRINTS Bacterial leader peptidase 1 (S26A) family signature 7 23 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele03g0295 151 ProSitePatterns Signal peptidases I signature 3. 113 126 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0295 Lele-ChrLele03 1656507 1659172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0295 16 140 MADS-box Gene Family AT1G29960 30.400 1.50e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0295 03 1656507 1659172 Lele25g0240 25 1435822 1438012 CCT
Lele03g0295 03 1656507 1659172 Lele26g0249 26 1483917 1489295 CCT
Lele03g0295 03 1656507 1659172 Lele27g1847 27 23290079 23295848 CCT
Lele03g0295 03 1656507 1659172 Lele28g0262 28 1546283 1551643 CCT
Lele03g0295 03 1656507 1659172 Lele03g0295 03 1656507 1659172 ECH
Lele01g0292 01 1667583 1675444 Lele03g0295 03 1656507 1659172 hybridization
Lele02g0280 02 1599871 1607278 Lele03g0295 03 1656507 1659172 hybridization