Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0286 ATGTTAATCATTTCCGTGCTTTTTTTCCCCCTTCTCTACCGTAACGTTGCTTTCCTTTGTCCTCGGGTCATATCATGGAGCTTTGGTTCCAAGCTAAAAGTTCTTTATCTACAACCCCGCAACAGTAAGGGCTCGGTGTTACTTTTGTCTCTGCATATCTCTTTCCAAAATTTCACCATTAATCCAAAGCAAGAAGATCACCAGAGAGAAGAGAAAGAGTTTGCTGTGAGAGAGATGGGGAGAGGTAAGATTGAGATCAAGAGAATTGAGAACTCAAGCAACAGGCAAGTGACCTACTCCAAGAGGAAGAATGGGATCCTGAAGAAGGCGAAGGAAATTACTGTTCTATGCGATGCCCAAGTTTCCCTTATTATCTTTGCTCCATCTGGAAAGATGCATGAATACATCAGCCCTTCAACAACGTTGATTAACTTCCTAGAAAGATATCACAAAACGTCTGGGAAGAGGCTCTGGGACGGCAAGCATGAGGACTTAAACAACGAAATTGATAGACTCAAGAAAGAGAACGACTGCATGCAGATTGAACTCAGGCACTTGAAGGGAGAGGATGTGAACACGCTTAATTACAAGGAGCTTATGGCCTTAGAGGATGCCTTGGAATGTGGCCTCGCCGGAATACGCGAGAGACAGATGGAGATTTACAGGGCACACAGAAGAAATGGCAAGATGTTGGAGGAAGAGAACAGGGAGCTTAATTTTATACTGCAACAACGTTTGGCAATGGAAGGAGCGAGAGAATTGGAGAATGGATTTGACGAGACCATGAGGGAGTTCCATTCCCAGATGCCATTCGCCTTCCGAGTGCAGCCGATGCAGCCAAATCTTCAAGAGAGGAAGTGA 861 0.4483 MLIISVLFFPLLYRNVAFLCPRVISWSFGSKLKVLYLQPRNSKGSVLLLSLHISFQNFTINPKQEDHQREEKEFAVREMGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAPSGKMHEYISPSTTLINFLERYHKTSGKRLWDGKHEDLNNEIDRLKKENDCMQIELRHLKGEDVNTLNYKELMALEDALECGLAGIRERQMEIYRAHRRNGKMLEEENRELNFILQQRLAMEGARELENGFDETMREFHSQMPFAFRVQPMQPNLQERK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0286 286 SMART madsneu2 79 138 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 CDD MADS_MEF2_like 80 158 IPR033896 GO:0000977|GO:0045944
Lele03g0286 286 Gene3D - 91 177 IPR036879 GO:0003677|GO:0046983
Lele03g0286 286 ProSitePatterns MADS-box domain signature. 81 135 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 Pfam K-box region 161 240 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele03g0286 286 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 88 135 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 ProSiteProfiles MADS-box domain profile. 79 139 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 PANTHER SERUM RESPONSE FACTOR HOMOLOG 81 281 - -
Lele03g0286 286 SUPERFAMILY SRF-like 80 174 IPR036879 GO:0003677|GO:0046983
Lele03g0286 286 Coils Coil 155 189 - -
Lele03g0286 286 PRINTS MADS domain signature 81 101 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 PRINTS MADS domain signature 116 137 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 PRINTS MADS domain signature 101 116 IPR002100 GO:0003677|GO:0046983
Lele03g0286 286 ProSiteProfiles K-box domain profile. 162 248 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0286 Lele-ChrLele03 1590197 1594189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0286 79 221 MADS-box Gene Family AT5G20240 65.734 1.19e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele03g0286 K-box 7.7e-18 No_clan