Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0280 ATGGAAACTGAGGATGGAACAAGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCGGATAGCAATGATGTTAAAAAGAGGGTTCAGCGCTTTAATAGTGAAGCTGTGAATAATGGGGTGGTAATTGCAGACAGGAACGATGTTGCTCAAGGGTACTCTGGTGTACTTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAAGCAAAGCTCCAGAAGATTGCAGAACATACTCAGAAGCTGCAAGTCACATAGCAGGCCAGGCTGTAAAGAAACCATGTAATGTAGCTGTAGTAAATACTTCGGATAAGCATTTACATGCACATTGGGGAAATGTTGTACTAATGCACTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTCATGCACCGTCCTAAAATTAGTTGTGCCACTACTGTAAAGGAAACTTGTAAAATCGACAAAGTTGGACAAGATTACTCTCCACACTTTGAGCTGATGTCTCATAGATTACGGAAGGAAGTTAATGGGCATGCAAATGTCTTGCGCAATGGATCTTGTAACGAGTCAGATGGTCCTGATGCAAATGAGATGTGTCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATTTCAAGAACTTTCTACTGTGAGCAGGCTGGAGTTTTAGTGCATAGCAAATTCAAAGATGGAAAGCAGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACCGTGGCATGTATAAGATTTGCACTTGCAGGCATTGTGGAAACAAAGCAAACGGGAAAGATGGTTTGGTTTGTGATTCATGTGAGATGTTCCGTATCTCCTGTATTGAGCCTCCTGTCAAAGAGATACCCCACAAGAGCTGGTACTTTGCCAAACGCACTGCTAGTGGAATCGGATCTCCACATGAAAGTTGCGCGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCCTGTAATTGAGGAAACAATTAATGAATTGGAAGAGAATTCAAATTGCACCTACGATGGGGCTCAAGCATCTAGAGGGGGGAAAATTGACATGATCTGCAAAGTTTGTGAAAATGAAGTGGATGGTGAAAGAATTAAAATCTGCGGTCACTCTGCCTGCTCTAAGTACTATCATGTAAGGTGTTTGACAAGTAAACAGTCCACATCATATGGTTCCTGCTGGTACTGCCCTTCTTGCATATGCCAAGTTTGCCTCACTGATAAAGATGATTACCAGATCGTTCTCTGTGATGGCTGTGATGATGCTTACCACATATATTGCATGAAACCTCCCCGAACTTCTATTCCCAAAGGAAAATGGTTCTGCAGAAAATGTGATACAGGGTTACAAGTAATACGACGGGCGAAAAAGTTATATGAGAGTAAAAAGCAGAGAAAAACGAGTGAAGATGGTTCAAAACCAGGCGATAGATTTGAAAAGAACTGGAACAATAAACACGGACACGGACGAGATTTGGATAAAGGTGGAGGAGTGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGACGACTTGGCTGCAATCCGGACGTTATGA 1872 0.4172 METEDGTSNGDNTECSEAVQCLKSEAVNNGVADSNDVKKRVQRFNSEAVNNGVVIADRNDVAQGYSGVLESFRTYKRRKHVKLNSESKAPEDCRTYSEAASHIAGQAVKKPCNVAVVNTSDKHLHAHWGNVVLMHLYQSLGDDKGGIEGCMREALMHRPKISCATTVKETCKIDKVGQDYSPHFELMSHRLRKEVNGHANVLRNGSCNESDGPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVSLAKGLSNISRTFYCEQAGVLVHSKFKDGKQEFCNQESDSHMKPEQTEDRGMYKICTCRHCGNKANGKDGLVCDSCEMFRISCIEPPVKEIPHKSWYFAKRTASGIGSPHESCAVCERLNDSKTLNFDESFPVIEETINELEENSNCTYDGAQASRGGKIDMICKVCENEVDGERIKICGHSACSKYYHVRCLTSKQSTSYGSCWYCPSCICQVCLTDKDDYQIVLCDGCDDAYHIYCMKPPRTSIPKGKWFCRKCDTGLQVIRRAKKLYESKKQRKTSEDGSKPGDRFEKNWNNKHGHGRDLDKGGGVDMLLTAANTLNLEDDLAAIRTL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0280 623 ProSiteProfiles Zinc finger RING-type profile. 456 502 IPR001841 -
Lele03g0280 623 MobiDBLite consensus disorder prediction 563 594 - -
Lele03g0280 623 FunFam PHD finger protein EHD3 isoform A 237 397 - -
Lele03g0280 623 SMART PHD_3 455 503 IPR001965 -
Lele03g0280 623 SMART PHD_3 506 549 IPR001965 -
Lele03g0280 623 ProSiteProfiles Zinc finger PHD-type profile. 501 551 IPR019787 -
Lele03g0280 623 SUPERFAMILY FYVE/PHD zinc finger 453 504 IPR011011 -
Lele03g0280 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 502 IPR013083 -
Lele03g0280 623 ProSiteProfiles Zinc finger PHD-type profile. 453 505 IPR019787 -
Lele03g0280 623 PANTHER OS02G0192300 PROTEIN 252 389 - -
Lele03g0280 623 Pfam PHD-finger 503 549 IPR019787 -
Lele03g0280 623 Gene3D - 237 394 - -
Lele03g0280 623 SUPERFAMILY FYVE/PHD zinc finger 503 556 IPR011011 -
Lele03g0280 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 550 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0280 Lele-ChrLele03 1542706 1547103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0280 503 569 C2H2 Transcription Factor Family AT3G01460 41.791 3.32e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele03g0280 PHD 3.4e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0280 03 1542706 1547103 Lele03g0280 03 1542706 1547103 ECH
Lele01g0276 01 1547282 1555562 Lele03g0280 03 1542706 1547103 hybridization
Lele02g0261 02 1482699 1490216 Lele03g0280 03 1542706 1547103 hybridization