Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g0272 ATGATGAAGCCCATTAAAATGTGTTTGTGGTGGATAACTTTATTAGCAGTTATGGCAGTTGCAGCCACCCAATCCCTGCCAGGCTGCCCCAAGAAATGCGGAGAAGTTGAGATTCCATATCCATTTGGGGTAGGCGTTCAATCTGGTGCCGATAACAAGTGTTTCTTTGAGGAGGCGTTTCATGTGGATTGTAAAAACTCCATGTTATTTCAAGGCAACGTCGAAATCTCATACATATCCCTCGAAGGTCATATGGATATGTCTCTGCCTGTTTCCAAGGTCTGTTTCAATGATACAGGGGGAGTCCTAGATAACAGTATGAGCGTGACTCTGTCAACCCCAGTTTTCACCGTCTCTAGCACTAAAAACAAGTTCGTAAGCGTTGGCTGCGACACTTACGGCTACTTGAACAGTTTCCAGAACAGTCACAGATATTCCACCGGCTGCTTGACGAAATGTAACGGAGTTCCCAACCAGCAGAGCAATGGAACTTGTTCTGGGATTGGGTGCTGCCAGGTGGATATTCCTCTGGGAATGAGGAATATCAGTATTGAAGCCTTCAGCTTCAATGTGCAACGAAAGGCGTCAGACTTCAACAACTGTAGCTATGCTTTTGTGGCCAAGCAAGGCTGGCTTAATTTCTCTACGGCTGATCTCAGGTCCTTGCCGTTTGAGAAGGCGCTGCTGGTAGTGGATTGGGCTATTTCCAACGGCACATGTGAAAGTGAGAGGACATCACCGGACTATGCCTGCAAATCCATCAACACCGACTGCGAAGACTCGGGCTATGGATTTGGGTACCGTTGCAGATGCAAACCCGGTTTTGAAGGGAACCCTTATCTTCCAGAGGGTTGCCAAGATATAGACGAGTGTAAGGATTCGACCCATAATTGCACAAGTGAAGATAACTGTCGTAACACTGTTGGGTCTTTTGAATGTTATTGCCCTCGCGGTTACACTGGGAATGGAACCAAGGAAGAAGGATGTCACCCGCCCTGGCGCCAAAATCCATTCACAATACTTCTCATTGGTGCGAGCGTAGGATTGGCAGTTCTTTTTGTGTGTGTGACTTGGCTGTATTTGATATACCAGAAGAGGAAGCTGATGAAGCAAAAGGACAAATTCTTTCGACAAAATGGGGGCGCTATTTTGCAACAAAAGCTCTCTGTAAAACAAGGCTCCTCCCTCACATCCAAAATCTTTACTGCACAAGAATTGAGAAAGGCTACCGACAACTTCCACGACGACCTAGTTATTGGCCGTGGTGGTTTTGGTACCGTTTACAAAGGAATTCTCCCTGACAACACTGTTGTCGCAATCAAGAAATCAAGACTGGTGGATCAAAGCCAAATTGAACAGTTCATTAATGAGATGATTATACTCTCCCAGATAAATCATAGGAACGTGGTCAAACTGCTAGGTACTTTCGGATACTTGGACCCAGAATACATGCAAACGAACCAACTCACTGAGAAGAGCGATGTGTACAGTTTTGGAGTTGTCATTCTGGAACTGTTAACAGGAAGAAAGGCGCTGTCATTTGATGGACCAGAAGAGGAAAGAAGCCTCACAATGTACTTCCTATCATCCTTGAATGAGGGTCGCTTGTTTGAAGTGGTTGAAAGAGGGATGGTGAATGACGAAAACAAGCAGATGCTGAACGAAGTGGCTGAGCTCGCAGCGAGGTGCTTGAGACTTAAAGGGGAGGAGAGACCAGGCATGAAGGAAGTGGCAATGGAGTTGGAGGGAATAAGGATGACAGGGGAACATCCATGGATCAGCAACGCAGAGGAATCACAGTCATTAATTTATCGTCAGACGTCCCGTTTTGCTGAATCTGTTGATAGCAGTGTTCATAAAAACGGTGGGTGGGATAGCATTATAGATCGTGTGCTAATTAATTTAGATGATGGAAGATGA 1920 0.4568 MMKPIKMCLWWITLLAVMAVAATQSLPGCPKKCGEVEIPYPFGVGVQSGADNKCFFEEAFHVDCKNSMLFQGNVEISYISLEGHMDMSLPVSKVCFNDTGGVLDNSMSVTLSTPVFTVSSTKNKFVSVGCDTYGYLNSFQNSHRYSTGCLTKCNGVPNQQSNGTCSGIGCCQVDIPLGMRNISIEAFSFNVQRKASDFNNCSYAFVAKQGWLNFSTADLRSLPFEKALLVVDWAISNGTCESERTSPDYACKSINTDCEDSGYGFGYRCRCKPGFEGNPYLPEGCQDIDECKDSTHNCTSEDNCRNTVGSFECYCPRGYTGNGTKEEGCHPPWRQNPFTILLIGASVGLAVLFVCVTWLYLIYQKRKLMKQKDKFFRQNGGAILQQKLSVKQGSSLTSKIFTAQELRKATDNFHDDLVIGRGGFGTVYKGILPDNTVVAIKKSRLVDQSQIEQFINEMIILSQINHRNVVKLLGTFGYLDPEYMQTNQLTEKSDVYSFGVVILELLTGRKALSFDGPEEERSLTMYFLSSLNEGRLFEVVERGMVNDENKQMLNEVAELAARCLRLKGEERPGMKEVAMELEGIRMTGEHPWISNAEESQSLIYRQTSRFAESVDSSVHKNGGWDSIIDRVLINLDDGR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g0272 639 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Lele03g0272 639 Pfam Protein kinase domain 414 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele03g0272 639 FunFam Fibrillin 2 282 327 - -
Lele03g0272 639 Gene3D Phosphorylase Kinase; domain 1 378 475 - -
Lele03g0272 639 SMART egfca_6 287 330 IPR001881 GO:0005509
Lele03g0272 639 CDD EGF_CA 287 321 - -
Lele03g0272 639 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Lele03g0272 639 Gene3D Laminin 289 327 - -
Lele03g0272 639 Pfam Calcium-binding EGF domain 287 329 IPR001881 GO:0005509
Lele03g0272 639 SUPERFAMILY Protein kinase-like (PK-like) 404 592 IPR011009 -
Lele03g0272 639 Gene3D Transferase(Phosphotransferase) domain 1 476 615 - -
Lele03g0272 639 Coils Coil 549 569 - -
Lele03g0272 639 ProSiteProfiles Protein kinase domain profile. 203 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele03g0272 639 SMART egf_5 290 330 IPR000742 -
Lele03g0272 639 SMART egf_5 239 286 IPR000742 -
Lele03g0272 639 Pfam Protein tyrosine and serine/threonine kinase 478 581 IPR001245 GO:0004672|GO:0006468
Lele03g0272 639 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 474 IPR045274 GO:0007166
Lele03g0272 639 ProSiteProfiles EGF-like domain profile. 287 330 IPR000742 -
Lele03g0272 639 SUPERFAMILY EGF/Laminin 286 322 - -
Lele03g0272 639 ProSitePatterns Calcium-binding EGF-like domain signature. 287 313 IPR018097 GO:0005509
Lele03g0272 639 Gene3D Laminin 237 288 - -
Lele03g0272 639 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 304 315 IPR000152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g0272 Lele-ChrLele03 1502171 1504591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g0272 474 639 Receptor kinase-like Gene Family AT1G21230 44.048 1.41e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lele03g0272 PK_Tyr_Ser-Thr 5.3e-11 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0267 01 1509776 1512162 Lele03g0272 03 1502171 1504591 hybridization